ChengsongTanPhdThesis/Chapters/Introduction.tex
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% Chapter 1
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\chapter{Introduction} % Main chapter title
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\label{Introduction} % For referencing the chapter elsewhere, use \ref{Chapter1} 
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%----------------------------------------------------------------------------------------
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% Define some commands to keep the formatting separated from the content 
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\newcommand{\keyword}[1]{\textbf{#1}}
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\newcommand{\tabhead}[1]{\textbf{#1}}
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\newcommand{\code}[1]{\texttt{#1}}
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\newcommand{\file}[1]{\texttt{\bfseries#1}}
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\newcommand{\option}[1]{\texttt{\itshape#1}}
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%boxes
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\newcommand*{\mybox}[1]{\framebox{\strut #1}}
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%\newcommand{\sflataux}[1]{\textit{sflat}\_\textit{aux} \, #1}
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\newcommand\sflat[1]{\llparenthesis #1 \rrparenthesis }
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\newcommand{\ASEQ}[3]{\textit{ASEQ}_{#1} \, #2 \, #3}
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\newcommand{\bderssimp}[2]{#1 \backslash_{bsimps} #2}
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\def\derssimp{\textit{ders}\_\textit{simp}}
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\newcommand{\bsimp}[1]{\textit{bsimp}(#1)}
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\def\bsimps{\textit{bsimp}}
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\newcommand{\ONE}{\mbox{\bf 1}}
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\newcommand{\AALTS}[2]{\oplus {\scriptstyle #1}\, #2}
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\def\cbn{\textit{createdByNtimes}}
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\def\hpa{\textit{highestPowerAux}}
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\def\hpower{\textit{highestPower}}
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\def\ntset{\textit{ntset}}
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\def\optermsimp{\textit{optermsimp}}
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\def\optermOsimp{\textit{optermOsimp}}
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\def\optermosimp{\textit{optermosimp}}
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\def\opterm{\textit{opterm}}
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\def\nString{\textit{nonemptyString}}
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\newcommand\myequiv{\mathrel{\stackrel{\makebox[0pt]{\mbox{\normalfont\tiny equiv}}}{=}}}
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\def\SEQ{\textit{SEQ}}
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\def\SEQs{\textit{SEQs}}
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\def\sequal{\stackrel{\mbox{\scriptsize rsimp}}{=}}
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\def\good{\textit{good}}
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\def\bfalse{\textit{false}}
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\def\Some{\textit{Some}}
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\def\decode{\textit{decode}}
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\def\internalise{\textit{internalise}}
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\def\lexer{\mathit{lexer}}
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\def\mkeps{\textit{mkeps}}
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\def\rerases{\textit{rerase}}
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\def\nonnested{\textit{nonnested}}
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\def\ACHAR{\textit{ACHAR}}
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\def\simpsulz{\textit{simp}_{Sulz}}
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\def\scfrewrites{\stackrel{*}{\rightsquigarrow_{scf}}}
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\def\fuse{\textit{fuse}}
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\def\POSIX{\textit{POSIX}}
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\def\ALTS{\textit{ALTS}}
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\def\ASTAR{\textit{ASTAR}}
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\def\retrieve{\textit{retrieve}}
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\def\Empty{\textit{Empty}}
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\def\Right{\textit{Right}}
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\def\Char{\textit{Char}}
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\def\rup{r^\uparrow}
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%\def\bderssimp{\mathit{bders}\_\mathit{simp}}
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\def\distinctWith{\textit{distinctWith}}
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\def\suffix{\textit{Suffix}}
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\def\size{\mathit{size}}
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\def\simp{\mathit{simp}}
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\def\simpALTs{\mathit{simp}\_\mathit{ALTs}}
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\def\blexersimp{\mathit{blexer}\_\mathit{simp}}
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\def\blexerStrong{\textit{blexerStrong}}
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\def\bsimpStrong{\textit{bsimpStrong}}
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\def\bdersStrongs{\textit{bdersStrong}}
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\newcommand{\bdersStrong}[2]{#1 \backslash_{bsimpStrongs} #2}
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\newcommand\rnullable[1]{\textit{rnullable} \; #1 }
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\newcommand\ChristianComment[1]{\textcolor{blue}{#1}\\}
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\def\rflts{\textit{rflts}}
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\def\rrewrite{\textit{rrewrite}}
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\def\bsimpalts{\textit{bsimp}_{ALTS}}
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\def\bsimpaseq{\textit{bsimp}_{ASEQ}}
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\def\rsimlalts{\textit{rsimp}_{ALTs}}
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\def\rsimpseq{\textit{rsimp}_{SEQ}}
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\def\erase{\textit{erase}}
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\def\RZERO{\mathbf{0}_r }
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\def\RONE{\mathbf{1}_r}
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\newcommand\RCHAR[1]{\mathbf{#1}_r}
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\newcommand\RALTS[1]{\sum #1}
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\newcommand\RSTAR[1]{#1^*}
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\lstdefinestyle{myScalastyle}{
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  frame=tb,
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  language=scala,
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  aboveskip=3mm,
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  belowskip=3mm,
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  showstringspaces=false,
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  columns=flexible,
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  basicstyle={\small\ttfamily},
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  numbers=none,
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  numberstyle=\tiny\color{gray},
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  keywordstyle=\color{blue},
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  commentstyle=\color{dkgreen},
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  stringstyle=\color{mauve},
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  frame=single,
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  breaklines=true,
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  breakatwhitespace=true,
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  tabsize=3,
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}
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%----------------------------------------------------------------------------------------
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%This part is about regular expressions, Brzozowski derivatives,
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%and a bit-coded lexing algorithm with proven correctness and time bounds.
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%TODO: look up snort rules to use here--give readers idea of what regexes look like
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Regular expressions are widely used in computer science: 
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be it in text-editors \parencite{atomEditor} with syntax highlighting and auto-completion;
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command-line tools like $\mathit{grep}$ that facilitate easy 
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text-processing \cite{grep}; network intrusion
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detection systems that inspect suspicious traffic; or compiler
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front ends.
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Given their usefulness and ubiquity, one would assume that
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modern regular expression matching implementations
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are mature and fully studied.
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Indeed, in a popular programming language's regular expression engine, 
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supplying it with regular expressions and strings,
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in most cases one can
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get the matching information in a very short time.
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Those engines can be blindingly fast--some 
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network intrusion detection systems
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use regular expression engines that are able to process 
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hundreds of megabytes or even gigabytes of data per second \parencite{Turo_ov__2020}.
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However, those engines can sometimes exhibit a surprising security vulnerability
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under a certain class of inputs.
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%However, , this is not the case for $\mathbf{all}$ inputs.
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%TODO: get source for SNORT/BRO's regex matching engine/speed
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Consider for example $(a^*)^*\,b$ and 
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strings of the form $aa..a$, these strings cannot be matched by this regular
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expression: Obviously the expected $b$ in the last
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position is missing. One would assume that modern regular expression
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matching engines can find this out very quickly. Surprisingly, if one tries
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this example in JavaScript, Python or Java 8, even with small strings, 
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say of lenght of around 30 $a$'s,
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the decision takes an absurd amount of time to finish (see graphs in figure \ref{fig:aStarStarb}).
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This is clearly exponential behaviour, and as can be seen
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is triggered by some relatively simple regular expressions.
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Java 9 and newer
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versions improve this behaviour somewhat, but are still slow compared 
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with the approach we are going to use in this thesis.
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This superlinear blowup in regular expression engines
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has caused grief in ``real life'' in the past where it is 
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given the name ``catastrophic backtracking'' or ``evil'' regular expressions.
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For example, on 20 July 2016 one evil
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regular expression brought the webpage
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\href{http://stackexchange.com}{Stack Exchange} to its
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knees.\footnote{\url{https://stackstatus.net/post/147710624694/outage-postmortem-july-20-2016}(Last accessed in 2019)}
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In this instance, a regular expression intended to just trim white
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spaces from the beginning and the end of a line actually consumed
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massive amounts of CPU resources---causing the web servers to grind to a
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halt. In this example, the time needed to process
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the string was 
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$O(n^2)$ with respect to the string length $n$. This
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quadratic overhead was enough for the homepage of Stack Exchange to
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respond so slowly that the load balancer assumed a $\mathit{DoS}$ 
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attack and therefore stopped the servers from responding to any
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requests. This made the whole site become unavailable. 
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\begin{figure}[p]
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\begin{center}
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\begin{tabular}{@{}c@{\hspace{0mm}}c@{}}
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={JavaScript},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[red,mark=*, mark options={fill=white}] table {re-js.data};
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\end{axis}
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\end{tikzpicture}
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  &
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    %ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Python},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[blue,mark=*, mark options={fill=white}] table {re-python2.data};
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\end{axis}
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\end{tikzpicture}\\ 
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Java 8},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[cyan,mark=*, mark options={fill=white}] table {re-java.data};
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\end{axis}
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\end{tikzpicture}
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  &
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    %ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Dart},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[green,mark=*, mark options={fill=white}] table {re-dart.data};
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\end{axis}
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\end{tikzpicture}\\ 
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Swift},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[purple,mark=*, mark options={fill=white}] table {re-swift.data};
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\end{axis}
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\end{tikzpicture}
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  & 
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    %ylabel={time in secs},
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    enlargelimits=true,
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    %xtick={0,5000,...,40000},
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    %xmax=40000,
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    %ymax=35,
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    restrict x to domain*=0:40000,
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    restrict y to domain*=0:35,
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    %ytick={0,5,...,30},
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    %scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Java9+},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[orange,mark=*, mark options={fill=white}] table {re-java9.data};
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\end{axis}
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\end{tikzpicture}\\ 
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\multicolumn{2}{c}{Graphs}
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\end{tabular}    
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\end{center}
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\caption{Graphs showing runtime for matching $(a^*)^*\,b$ with strings 
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           of the form $\protect\underbrace{aa..a}_{n}$ in various existing regular expression libraries.
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   The reason for their superlinear behaviour is that they do a depth-first-search
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   using NFAs.
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   If the string does not match, the regular expression matching
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   engine starts to explore all possibilities. 
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}\label{fig:aStarStarb}
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\end{figure}\afterpage{\clearpage}
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A more recent example is a global outage of all Cloudflare servers on 2 July
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2019. A poorly written regular expression exhibited catastrophic backtracking
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and exhausted CPUs that serve HTTP traffic. Although the outage
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had several causes, at the heart was a regular expression that
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was used to monitor network
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traffic.\footnote{\url{https://blog.cloudflare.com/details-of-the-cloudflare-outage-on-july-2-2019/}(Last accessed in 2022)}
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These problems with regular expressions 
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are not isolated events that happen
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very rarely, 
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%but actually widespread.
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%They occur so often that they have a 
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but they occur actually often enough that they have a
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name: Regular-Expression-Denial-Of-Service (ReDoS)
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attacks.
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Davis et al. \cite{Davis18} detected more
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than 1000 evil regular expressions
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in Node.js, Python core libraries, npm and in pypi. 
532
cc54ce075db5 restructured
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parents:
diff changeset
   425
They therefore concluded that evil regular expressions
634
Chengsong
parents: 633
diff changeset
   426
are real problems rather than just "a parlour trick".
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   427
603
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   428
This work aims to address this issue
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   429
with the help of formal proofs.
612
Chengsong
parents: 609
diff changeset
   430
We describe a lexing algorithm based
Chengsong
parents: 609
diff changeset
   431
on Brzozowski derivatives with verified correctness (in 
603
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   432
Isabelle/HOL)
634
Chengsong
parents: 633
diff changeset
   433
and a finiteness property for the size of derivatives.
612
Chengsong
parents: 609
diff changeset
   434
Such properties %guarantee the absence of 
Chengsong
parents: 609
diff changeset
   435
are an important step in preventing
Chengsong
parents: 609
diff changeset
   436
catastrophic backtracking once and for all.
604
Chengsong
parents: 603
diff changeset
   437
We will give more details in the next sections
Chengsong
parents: 603
diff changeset
   438
on (i) why the slow cases in graph \ref{fig:aStarStarb}
612
Chengsong
parents: 609
diff changeset
   439
can occur in traditional regular expression engines
604
Chengsong
parents: 603
diff changeset
   440
and (ii) why we choose our 
612
Chengsong
parents: 609
diff changeset
   441
approach based on Brzozowski derivatives and formal proofs.
602
Chengsong
parents: 601
diff changeset
   442
603
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   443
612
Chengsong
parents: 609
diff changeset
   444
\section{Preliminaries}%Regex, and the Problems with Regex Matchers}
601
Chengsong
parents: 600
diff changeset
   445
Regular expressions and regular expression matchers 
Chengsong
parents: 600
diff changeset
   446
have of course been studied for many, many years.
612
Chengsong
parents: 609
diff changeset
   447
Theoretical results in automata theory state 
604
Chengsong
parents: 603
diff changeset
   448
that basic regular expression matching should be linear
605
Chengsong
parents: 604
diff changeset
   449
w.r.t the input.
Chengsong
parents: 604
diff changeset
   450
This assumes that the regular expression
Chengsong
parents: 604
diff changeset
   451
$r$ was pre-processed and turned into a
630
d50a309a0645 with Christian
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parents: 628
diff changeset
   452
deterministic finite automaton (DFA) before matching~\cite{Sakarovitch2009}.
604
Chengsong
parents: 603
diff changeset
   453
By basic we mean textbook definitions such as the one
612
Chengsong
parents: 609
diff changeset
   454
below, involving only regular expressions for characters, alternatives,
604
Chengsong
parents: 603
diff changeset
   455
sequences, and Kleene stars:
Chengsong
parents: 603
diff changeset
   456
\[
612
Chengsong
parents: 609
diff changeset
   457
	r ::= c | r_1 + r_2 | r_1 \cdot r_2 | r^*
604
Chengsong
parents: 603
diff changeset
   458
\]
Chengsong
parents: 603
diff changeset
   459
Modern regular expression matchers used by programmers,
Chengsong
parents: 603
diff changeset
   460
however,
612
Chengsong
parents: 609
diff changeset
   461
support much richer constructs, such as bounded repetitions
604
Chengsong
parents: 603
diff changeset
   462
and back-references.
612
Chengsong
parents: 609
diff changeset
   463
To differentiate, we use the word \emph{regex} to refer
605
Chengsong
parents: 604
diff changeset
   464
to those expressions with richer constructs while reserving the
Chengsong
parents: 604
diff changeset
   465
term \emph{regular expression}
Chengsong
parents: 604
diff changeset
   466
for the more traditional meaning in formal languages theory.
Chengsong
parents: 604
diff changeset
   467
We follow this convention 
Chengsong
parents: 604
diff changeset
   468
in this thesis.
Chengsong
parents: 604
diff changeset
   469
In the future, we aim to support all the popular features of regexes, 
612
Chengsong
parents: 609
diff changeset
   470
but for this work we mainly look at basic regular expressions
Chengsong
parents: 609
diff changeset
   471
and bounded repetitions.
604
Chengsong
parents: 603
diff changeset
   472
605
Chengsong
parents: 604
diff changeset
   473
Chengsong
parents: 604
diff changeset
   474
Chengsong
parents: 604
diff changeset
   475
%Most modern regex libraries
Chengsong
parents: 604
diff changeset
   476
%the so-called PCRE standard (Peral Compatible Regular Expressions)
Chengsong
parents: 604
diff changeset
   477
%has the back-references
612
Chengsong
parents: 609
diff changeset
   478
Regexes come with a number of constructs
605
Chengsong
parents: 604
diff changeset
   479
that make it more convenient for 
604
Chengsong
parents: 603
diff changeset
   480
programmers to write regular expressions.
612
Chengsong
parents: 609
diff changeset
   481
Depending on the types of constructs
605
Chengsong
parents: 604
diff changeset
   482
the task of matching and lexing with them
612
Chengsong
parents: 609
diff changeset
   483
will have different levels of complexity.
Chengsong
parents: 609
diff changeset
   484
Some of those constructs are just syntactic sugars that are
604
Chengsong
parents: 603
diff changeset
   485
simply short hand notations
605
Chengsong
parents: 604
diff changeset
   486
that save the programmers a few keystrokes.
612
Chengsong
parents: 609
diff changeset
   487
These will not cause problems for regex libraries.
605
Chengsong
parents: 604
diff changeset
   488
For example the
612
Chengsong
parents: 609
diff changeset
   489
non-binary alternative involving three or more choices just means:
604
Chengsong
parents: 603
diff changeset
   490
\[
605
Chengsong
parents: 604
diff changeset
   491
	(a | b | c) \stackrel{means}{=} ((a + b)+ c)
604
Chengsong
parents: 603
diff changeset
   492
\]
612
Chengsong
parents: 609
diff changeset
   493
Similarly, the range operator used to express the alternative
Chengsong
parents: 609
diff changeset
   494
of all characters between its operands is just a concise way:
604
Chengsong
parents: 603
diff changeset
   495
\[
605
Chengsong
parents: 604
diff changeset
   496
	[0~-9]\stackrel{means}{=} (0 | 1 | \ldots | 9 ) \; \text{(all number digits)}
604
Chengsong
parents: 603
diff changeset
   497
\]
612
Chengsong
parents: 609
diff changeset
   498
for an alternative. The
Chengsong
parents: 609
diff changeset
   499
wildcard character $.$ is used to refer to any single character,
605
Chengsong
parents: 604
diff changeset
   500
\[
Chengsong
parents: 604
diff changeset
   501
	. \stackrel{means}{=} [0-9a-zA-Z+-()*\&\ldots]
Chengsong
parents: 604
diff changeset
   502
\]
612
Chengsong
parents: 609
diff changeset
   503
except the newline.
604
Chengsong
parents: 603
diff changeset
   504
605
Chengsong
parents: 604
diff changeset
   505
\subsection{Bounded Repetitions}
612
Chengsong
parents: 609
diff changeset
   506
More interesting are bounded repetitions, which can 
Chengsong
parents: 609
diff changeset
   507
make the regular expressions much
605
Chengsong
parents: 604
diff changeset
   508
more compact.
612
Chengsong
parents: 609
diff changeset
   509
There are 
Chengsong
parents: 609
diff changeset
   510
$r^{\{n\}}$, $r^{\{\ldots m\}}$, $r^{\{n\ldots \}}$ and $r^{\{n\ldots m\}}$
Chengsong
parents: 609
diff changeset
   511
(where $n$ and $m$ are constant natural numbers).
Chengsong
parents: 609
diff changeset
   512
Like the star regular expressions, the set of strings or language
Chengsong
parents: 609
diff changeset
   513
a bounded regular expression can match
Chengsong
parents: 609
diff changeset
   514
is defined using the power operation on sets:
605
Chengsong
parents: 604
diff changeset
   515
\begin{center}
Chengsong
parents: 604
diff changeset
   516
	\begin{tabular}{lcl}
Chengsong
parents: 604
diff changeset
   517
		$L \; r^{\{n\}}$ & $\dn$ & $(L \; r)^n$\\
Chengsong
parents: 604
diff changeset
   518
		$L \; r^{\{\ldots m\}}$ & $\dn$ & $\bigcup_{0 \leq i \leq m}. (L \; r)^i$\\
Chengsong
parents: 604
diff changeset
   519
		$L \; r^{\{n\ldots \}}$ & $\dn$ & $\bigcup_{n \leq i}. (L \; r)^i$\\
Chengsong
parents: 604
diff changeset
   520
		$L \; r^{\{n \ldots m\}}$ & $\dn$ & $\bigcup_{n \leq i \leq m}. (L \; r)^i$
Chengsong
parents: 604
diff changeset
   521
	\end{tabular}
Chengsong
parents: 604
diff changeset
   522
\end{center}
612
Chengsong
parents: 609
diff changeset
   523
The attraction of bounded repetitions is that they can be
Chengsong
parents: 609
diff changeset
   524
used to avoid a blow up: for example $r^{\{n\}}$
Chengsong
parents: 609
diff changeset
   525
is a shorthand for
605
Chengsong
parents: 604
diff changeset
   526
\[
Chengsong
parents: 604
diff changeset
   527
	\underbrace{r\ldots r}_\text{n copies of r}.
Chengsong
parents: 604
diff changeset
   528
\]
Chengsong
parents: 604
diff changeset
   529
%Therefore, a naive algorithm that simply unfolds
Chengsong
parents: 604
diff changeset
   530
%them into their desugared forms
Chengsong
parents: 604
diff changeset
   531
%will suffer from at least an exponential runtime increase.
603
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   532
612
Chengsong
parents: 609
diff changeset
   533
Chengsong
parents: 609
diff changeset
   534
The problem with matching 
Chengsong
parents: 609
diff changeset
   535
is that tools based on the classic notion of
Chengsong
parents: 609
diff changeset
   536
automata need to expand $r^{\{n\}}$ into $n$ connected 
603
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   537
copies of the automaton for $r$. This leads to very inefficient matching
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   538
algorithms  or algorithms that consume large amounts of memory.
605
Chengsong
parents: 604
diff changeset
   539
Implementations using $\DFA$s will
Chengsong
parents: 604
diff changeset
   540
either become excruciatingly slow 
630
d50a309a0645 with Christian
Chengsong
parents: 628
diff changeset
   541
(for example Verbatim++~\cite{Verbatimpp}) or get
605
Chengsong
parents: 604
diff changeset
   542
out of memory errors (for example $\mathit{LEX}$ and 
Chengsong
parents: 604
diff changeset
   543
$\mathit{JFLEX}$\footnote{which are lexer generators
Chengsong
parents: 604
diff changeset
   544
in C and JAVA that generate $\mathit{DFA}$-based
Chengsong
parents: 604
diff changeset
   545
lexers. The user provides a set of regular expressions
Chengsong
parents: 604
diff changeset
   546
and configurations to them, and then 
Chengsong
parents: 604
diff changeset
   547
gets an output program encoding a minimized $\mathit{DFA}$
Chengsong
parents: 604
diff changeset
   548
that can be compiled and run. 
Chengsong
parents: 604
diff changeset
   549
When given the above countdown regular expression,
Chengsong
parents: 604
diff changeset
   550
a small $n$ (a few dozen) would result in a 
Chengsong
parents: 604
diff changeset
   551
determinised automata
612
Chengsong
parents: 609
diff changeset
   552
with millions of states.}) for large counters.
Chengsong
parents: 609
diff changeset
   553
A classic example for this phenomenon is the regular expression $(a+b)^*  a (a+b)^{n}$
605
Chengsong
parents: 604
diff changeset
   554
where the minimal DFA requires at least $2^{n+1}$ states.
Chengsong
parents: 604
diff changeset
   555
For example, when $n$ is equal to 2,
612
Chengsong
parents: 609
diff changeset
   556
The corresponding $\mathit{NFA}$ looks like:
604
Chengsong
parents: 603
diff changeset
   557
\begin{center}
Chengsong
parents: 603
diff changeset
   558
\begin{tikzpicture}[shorten >=1pt,node distance=2cm,on grid,auto] 
Chengsong
parents: 603
diff changeset
   559
   \node[state,initial] (q_0)   {$q_0$}; 
Chengsong
parents: 603
diff changeset
   560
   \node[state, red] (q_1) [right=of q_0] {$q_1$}; 
Chengsong
parents: 603
diff changeset
   561
   \node[state, red] (q_2) [right=of q_1] {$q_2$}; 
Chengsong
parents: 603
diff changeset
   562
   \node[state, accepting, red](q_3) [right=of q_2] {$q_3$};
Chengsong
parents: 603
diff changeset
   563
    \path[->] 
Chengsong
parents: 603
diff changeset
   564
    (q_0) edge  node {a} (q_1)
Chengsong
parents: 603
diff changeset
   565
    	  edge [loop below] node {a,b} ()
Chengsong
parents: 603
diff changeset
   566
    (q_1) edge  node  {a,b} (q_2)
Chengsong
parents: 603
diff changeset
   567
    (q_2) edge  node  {a,b} (q_3);
Chengsong
parents: 603
diff changeset
   568
\end{tikzpicture}
Chengsong
parents: 603
diff changeset
   569
\end{center}
612
Chengsong
parents: 609
diff changeset
   570
when turned into a DFA by the subset construction
Chengsong
parents: 609
diff changeset
   571
requires at least $2^3$ states.\footnote{The 
605
Chengsong
parents: 604
diff changeset
   572
red states are "countdown states" which counts down 
604
Chengsong
parents: 603
diff changeset
   573
the number of characters needed in addition to the current
Chengsong
parents: 603
diff changeset
   574
string to make a successful match.
Chengsong
parents: 603
diff changeset
   575
For example, state $q_1$ indicates a match that has
Chengsong
parents: 603
diff changeset
   576
gone past the $(a|b)^*$ part of $(a|b)^*a(a|b)^{\{2\}}$,
Chengsong
parents: 603
diff changeset
   577
and just consumed the "delimiter" $a$ in the middle, and 
Chengsong
parents: 603
diff changeset
   578
need to match 2 more iterations of $(a|b)$ to complete.
Chengsong
parents: 603
diff changeset
   579
State $q_2$ on the other hand, can be viewed as a state
Chengsong
parents: 603
diff changeset
   580
after $q_1$ has consumed 1 character, and just waits
Chengsong
parents: 603
diff changeset
   581
for 1 more character to complete.
Chengsong
parents: 603
diff changeset
   582
$q_3$ is the last state, requiring 0 more character and is accepting.
Chengsong
parents: 603
diff changeset
   583
Depending on the suffix of the
Chengsong
parents: 603
diff changeset
   584
input string up to the current read location,
Chengsong
parents: 603
diff changeset
   585
the states $q_1$ and $q_2$, $q_3$
Chengsong
parents: 603
diff changeset
   586
may or may
Chengsong
parents: 603
diff changeset
   587
not be active, independent from each other.
Chengsong
parents: 603
diff changeset
   588
A $\mathit{DFA}$ for such an $\mathit{NFA}$ would
Chengsong
parents: 603
diff changeset
   589
contain at least $2^3$ non-equivalent states that cannot be merged, 
Chengsong
parents: 603
diff changeset
   590
because the subset construction during determinisation will generate
Chengsong
parents: 603
diff changeset
   591
all the elements in the power set $\mathit{Pow}\{q_1, q_2, q_3\}$.
Chengsong
parents: 603
diff changeset
   592
Generalizing this to regular expressions with larger
Chengsong
parents: 603
diff changeset
   593
bounded repetitions number, we have that
Chengsong
parents: 603
diff changeset
   594
regexes shaped like $r^*ar^{\{n\}}$ when converted to $\mathit{DFA}$s
605
Chengsong
parents: 604
diff changeset
   595
would require at least $2^{n+1}$ states, if $r$ itself contains
604
Chengsong
parents: 603
diff changeset
   596
more than 1 string.
Chengsong
parents: 603
diff changeset
   597
This is to represent all different 
605
Chengsong
parents: 604
diff changeset
   598
scenarios which "countdown" states are active.}
603
370fe1dde7c7 more restructuring chap1
Chengsong
parents: 602
diff changeset
   599
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   600
605
Chengsong
parents: 604
diff changeset
   601
Bounded repetitions are very important because they
612
Chengsong
parents: 609
diff changeset
   602
tend to occur a lot in practical use,
Chengsong
parents: 609
diff changeset
   603
for example in the regex library RegExLib,
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   604
the rules library of Snort \cite{Snort1999}\footnote{
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   605
Snort is a network intrusion detection (NID) tool
608
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   606
for monitoring network traffic.
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   607
The network security community curates a list
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   608
of malicious patterns written as regexes,
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   609
which is used by Snort's detection engine
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   610
to match against network traffic for any hostile
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   611
activities such as buffer overflow attacks.}, 
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   612
as well as in XML Schema definitions (XSDs).
605
Chengsong
parents: 604
diff changeset
   613
According to Bj\"{o}rklund et al \cite{xml2015},
Chengsong
parents: 604
diff changeset
   614
more than half of the 
612
Chengsong
parents: 609
diff changeset
   615
XSDs they found on the Maven.org central repository
Chengsong
parents: 609
diff changeset
   616
have bounded regular expressions in them.
Chengsong
parents: 609
diff changeset
   617
Often the counters are quite large, with the largest being
Chengsong
parents: 609
diff changeset
   618
approximately up to ten million. 
605
Chengsong
parents: 604
diff changeset
   619
An example XSD they gave
612
Chengsong
parents: 609
diff changeset
   620
is:
Chengsong
parents: 609
diff changeset
   621
\begin{verbatim}
Chengsong
parents: 609
diff changeset
   622
<sequence minOccurs="0" maxOccurs="65535">
Chengsong
parents: 609
diff changeset
   623
 <element name="TimeIncr" type="mpeg7:MediaIncrDurationType"/>
Chengsong
parents: 609
diff changeset
   624
 <element name="MotionParams" type="float" minOccurs="2" maxOccurs="12"/>
Chengsong
parents: 609
diff changeset
   625
</sequence>
Chengsong
parents: 609
diff changeset
   626
\end{verbatim}
605
Chengsong
parents: 604
diff changeset
   627
This can be seen as the expression 
Chengsong
parents: 604
diff changeset
   628
$(ab^{2\ldots 12})^{0 \ldots 65535}$, where $a$ and $b$ are themselves
Chengsong
parents: 604
diff changeset
   629
regular expressions 
Chengsong
parents: 604
diff changeset
   630
satisfying certain constraints (such as 
Chengsong
parents: 604
diff changeset
   631
satisfying the floating point number format).
Chengsong
parents: 604
diff changeset
   632
It is therefore quite unsatisfying that 
Chengsong
parents: 604
diff changeset
   633
some regular expressions matching libraries
Chengsong
parents: 604
diff changeset
   634
impose adhoc limits
Chengsong
parents: 604
diff changeset
   635
for bounded regular expressions:
Chengsong
parents: 604
diff changeset
   636
For example, in the regular expression matching library in the Go
Chengsong
parents: 604
diff changeset
   637
language the regular expression $a^{1001}$ is not permitted, because no counter
Chengsong
parents: 604
diff changeset
   638
can be above 1000, and in the built-in Rust regular expression library
Chengsong
parents: 604
diff changeset
   639
expressions such as $a^{\{1000\}\{100\}\{5\}}$ give an error message
606
Chengsong
parents: 605
diff changeset
   640
for being too big. 
630
d50a309a0645 with Christian
Chengsong
parents: 628
diff changeset
   641
As Becchi and Crawley~\cite{Becchi08}  have pointed out,
606
Chengsong
parents: 605
diff changeset
   642
the reason for these restrictions
612
Chengsong
parents: 609
diff changeset
   643
is that they simulate a non-deterministic finite
606
Chengsong
parents: 605
diff changeset
   644
automata (NFA) with a breadth-first search.
Chengsong
parents: 605
diff changeset
   645
This way the number of active states could
Chengsong
parents: 605
diff changeset
   646
be equal to the counter number.
Chengsong
parents: 605
diff changeset
   647
When the counters are large, 
Chengsong
parents: 605
diff changeset
   648
the memory requirement could become
612
Chengsong
parents: 609
diff changeset
   649
infeasible, and a regex engine
Chengsong
parents: 609
diff changeset
   650
like Go will reject this pattern straight away.
606
Chengsong
parents: 605
diff changeset
   651
\begin{figure}[H]
Chengsong
parents: 605
diff changeset
   652
\begin{center}
Chengsong
parents: 605
diff changeset
   653
\begin{tikzpicture} [node distance = 2cm, on grid, auto]
Chengsong
parents: 605
diff changeset
   654
 
Chengsong
parents: 605
diff changeset
   655
    	\node (q0) [state, initial] {$0$};
Chengsong
parents: 605
diff changeset
   656
	\node (q1) [state, right = of q0] {$1$};
612
Chengsong
parents: 609
diff changeset
   657
	%\node (q2) [state, right = of q1] {$2$};
Chengsong
parents: 609
diff changeset
   658
	\node (qdots) [right = of q1] {$\ldots$};
606
Chengsong
parents: 605
diff changeset
   659
	\node (qn) [state, right = of qdots] {$n$};
Chengsong
parents: 605
diff changeset
   660
	\node (qn1) [state, right = of qn] {$n+1$};
Chengsong
parents: 605
diff changeset
   661
	\node (qn2) [state, right = of qn1] {$n+2$};
Chengsong
parents: 605
diff changeset
   662
	\node (qn3) [state, accepting, right = of qn2] {$n+3$}; 
Chengsong
parents: 605
diff changeset
   663
 
Chengsong
parents: 605
diff changeset
   664
\path [-stealth, thick]
Chengsong
parents: 605
diff changeset
   665
	(q0) edge [loop above] node {a} ()
Chengsong
parents: 605
diff changeset
   666
    (q0) edge node {a}   (q1) 
612
Chengsong
parents: 609
diff changeset
   667
    %(q1) edge node {.}   (q2)
Chengsong
parents: 609
diff changeset
   668
    (q1) edge node {.}   (qdots)
606
Chengsong
parents: 605
diff changeset
   669
    (qdots) edge node {.} (qn)
Chengsong
parents: 605
diff changeset
   670
    (qn) edge node {.} (qn1)
Chengsong
parents: 605
diff changeset
   671
    (qn1) edge node {b} (qn2)
Chengsong
parents: 605
diff changeset
   672
    (qn2) edge node {$c$} (qn3);
Chengsong
parents: 605
diff changeset
   673
\end{tikzpicture}
Chengsong
parents: 605
diff changeset
   674
%\begin{tikzpicture}[shorten >=1pt,node distance=2cm,on grid,auto] 
Chengsong
parents: 605
diff changeset
   675
%   \node[state,initial] (q_0)   {$0$}; 
Chengsong
parents: 605
diff changeset
   676
%   \node[state, ] (q_1) [right=of q_0] {$1$}; 
Chengsong
parents: 605
diff changeset
   677
%   \node[state, ] (q_2) [right=of q_1] {$2$}; 
Chengsong
parents: 605
diff changeset
   678
%   \node[state,
Chengsong
parents: 605
diff changeset
   679
%   \node[state, accepting, ](q_3) [right=of q_2] {$3$};
Chengsong
parents: 605
diff changeset
   680
%    \path[->] 
Chengsong
parents: 605
diff changeset
   681
%    (q_0) edge  node {a} (q_1)
Chengsong
parents: 605
diff changeset
   682
%    	  edge [loop below] node {a,b} ()
Chengsong
parents: 605
diff changeset
   683
%    (q_1) edge  node  {a,b} (q_2)
Chengsong
parents: 605
diff changeset
   684
%    (q_2) edge  node  {a,b} (q_3);
Chengsong
parents: 605
diff changeset
   685
%\end{tikzpicture}
Chengsong
parents: 605
diff changeset
   686
\end{center}
Chengsong
parents: 605
diff changeset
   687
\caption{The example given by Becchi and Crawley
Chengsong
parents: 605
diff changeset
   688
	that NFA simulation can consume large
Chengsong
parents: 605
diff changeset
   689
	amounts of memory: $.^*a.^{\{n\}}bc$ matching
Chengsong
parents: 605
diff changeset
   690
	strings of the form $aaa\ldots aaaabc$.
Chengsong
parents: 605
diff changeset
   691
	When traversing in a breadth-first manner,
Chengsong
parents: 605
diff changeset
   692
all states from 0 till $n+1$ will become active.}
Chengsong
parents: 605
diff changeset
   693
\end{figure}
Chengsong
parents: 605
diff changeset
   694
%Languages like $\mathit{Go}$ and $\mathit{Rust}$ use this
Chengsong
parents: 605
diff changeset
   695
%type of $\mathit{NFA}$ simulation and guarantees a linear runtime
Chengsong
parents: 605
diff changeset
   696
%in terms of input string length.
Chengsong
parents: 605
diff changeset
   697
%TODO:try out these lexers
Chengsong
parents: 605
diff changeset
   698
These problems can of course be solved in matching algorithms where 
605
Chengsong
parents: 604
diff changeset
   699
automata go beyond the classic notion and for instance include explicit
Chengsong
parents: 604
diff changeset
   700
counters \cite{Turo_ov__2020}.
612
Chengsong
parents: 609
diff changeset
   701
These solutions can be quite efficient,
606
Chengsong
parents: 605
diff changeset
   702
with the ability to process
612
Chengsong
parents: 609
diff changeset
   703
gigabytes of strings input per second
606
Chengsong
parents: 605
diff changeset
   704
even with large counters \cite{Becchi08}.
612
Chengsong
parents: 609
diff changeset
   705
But formal reasoning about these automata especially in Isabelle 
Chengsong
parents: 609
diff changeset
   706
can be challenging
Chengsong
parents: 609
diff changeset
   707
and un-intuitive. 
Chengsong
parents: 609
diff changeset
   708
Therefore, we take correctness and runtime claims made about these solutions
Chengsong
parents: 609
diff changeset
   709
with a grain of salt.
605
Chengsong
parents: 604
diff changeset
   710
628
7af4e2420a8c ready to submit~~
Chengsong
parents: 622
diff changeset
   711
In the work reported in \cite{FoSSaCS2023} and here, 
605
Chengsong
parents: 604
diff changeset
   712
we add better support using derivatives
Chengsong
parents: 604
diff changeset
   713
for bounded regular expressions $r^{\{n\}}$.
Chengsong
parents: 604
diff changeset
   714
The results
Chengsong
parents: 604
diff changeset
   715
extend straightforwardly to
Chengsong
parents: 604
diff changeset
   716
repetitions with an interval such as 
Chengsong
parents: 604
diff changeset
   717
$r^{\{n\ldots m\}}$.
608
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   718
The merit of Brzozowski derivatives (more on this later)
605
Chengsong
parents: 604
diff changeset
   719
on this problem is that
Chengsong
parents: 604
diff changeset
   720
it can be naturally extended to support bounded repetitions.
Chengsong
parents: 604
diff changeset
   721
Moreover these extensions are still made up of only
Chengsong
parents: 604
diff changeset
   722
inductive datatypes and recursive functions,
633
f1edd5ee1a12 more, including link
Chengsong
parents: 631
diff changeset
   723
making it handy to deal with them in theorem provers.
605
Chengsong
parents: 604
diff changeset
   724
%The point here is that Brzozowski derivatives and the algorithms by Sulzmann and Lu can be
Chengsong
parents: 604
diff changeset
   725
%straightforwardly extended to deal with bounded regular expressions
Chengsong
parents: 604
diff changeset
   726
%and moreover the resulting code still consists of only simple
Chengsong
parents: 604
diff changeset
   727
%recursive functions and inductive datatypes.
Chengsong
parents: 604
diff changeset
   728
Finally, bounded regular expressions do not destroy our finite
Chengsong
parents: 604
diff changeset
   729
boundedness property, which we shall prove later on.
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   730
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   731
606
Chengsong
parents: 605
diff changeset
   732
Chengsong
parents: 605
diff changeset
   733
Chengsong
parents: 605
diff changeset
   734
605
Chengsong
parents: 604
diff changeset
   735
\subsection{Back-References}
606
Chengsong
parents: 605
diff changeset
   736
The other way to simulate an $\mathit{NFA}$ for matching is choosing  
Chengsong
parents: 605
diff changeset
   737
a single transition each time, keeping all the other options in 
Chengsong
parents: 605
diff changeset
   738
a queue or stack, and backtracking if that choice eventually 
Chengsong
parents: 605
diff changeset
   739
fails. This method, often called a  "depth-first-search", 
Chengsong
parents: 605
diff changeset
   740
is efficient in a lot of cases, but could end up
Chengsong
parents: 605
diff changeset
   741
with exponential run time.
Chengsong
parents: 605
diff changeset
   742
The backtracking method is employed in regex libraries
Chengsong
parents: 605
diff changeset
   743
that support \emph{back-references}, for example
Chengsong
parents: 605
diff changeset
   744
in Java and Python.
605
Chengsong
parents: 604
diff changeset
   745
%\section{Back-references and The Terminology Regex}
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   746
605
Chengsong
parents: 604
diff changeset
   747
%When one constructs an $\NFA$ out of a regular expression
Chengsong
parents: 604
diff changeset
   748
%there is often very little to be done in the first phase, one simply 
Chengsong
parents: 604
diff changeset
   749
%construct the $\NFA$ states based on the structure of the input regular expression.
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   750
605
Chengsong
parents: 604
diff changeset
   751
%In the lexing phase, one can simulate the $\mathit{NFA}$ running in two ways:
Chengsong
parents: 604
diff changeset
   752
%one by keeping track of all active states after consuming 
Chengsong
parents: 604
diff changeset
   753
%a character, and update that set of states iteratively.
Chengsong
parents: 604
diff changeset
   754
%This can be viewed as a breadth-first-search of the $\mathit{NFA}$
Chengsong
parents: 604
diff changeset
   755
%for a path terminating
Chengsong
parents: 604
diff changeset
   756
%at an accepting state.
606
Chengsong
parents: 605
diff changeset
   757
Chengsong
parents: 605
diff changeset
   758
Chengsong
parents: 605
diff changeset
   759
Chengsong
parents: 605
diff changeset
   760
Given a regular expression like this (the sequence
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   761
operator is omitted for brevity):
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   762
\begin{center}
606
Chengsong
parents: 605
diff changeset
   763
	$r_1r_2r_3r_4$
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   764
\end{center}
606
Chengsong
parents: 605
diff changeset
   765
one could label sub-expressions of interest 
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   766
by parenthesizing them and giving 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   767
them a number by the order in which their opening parentheses appear.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   768
One possible way of parenthesizing and labelling is given below:
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   769
\begin{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   770
	$\underset{1}{(}r_1\underset{2}{(}r_2\underset{3}{(}r_3)\underset{4}{(}r_4)))$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   771
\end{center}
606
Chengsong
parents: 605
diff changeset
   772
The sub-expressions
Chengsong
parents: 605
diff changeset
   773
$r_1r_2r_3r_4$, $r_1r_2r_3$, $r_3$ and $r_4$ are labelled
Chengsong
parents: 605
diff changeset
   774
by 1 to 4, and can be ``referred back'' by their respective numbers. 
Chengsong
parents: 605
diff changeset
   775
%These sub-expressions are called "capturing groups".
Chengsong
parents: 605
diff changeset
   776
To do so, we use the syntax $\backslash i$ 
Chengsong
parents: 605
diff changeset
   777
to denote that we want the sub-string 
Chengsong
parents: 605
diff changeset
   778
of the input just matched by the i-th
Chengsong
parents: 605
diff changeset
   779
sub-expression to appear again, 
Chengsong
parents: 605
diff changeset
   780
exactly the same as it first appeared: 
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   781
\begin{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   782
$\ldots\underset{\text{i-th lparen}}{(}{r_i})\ldots 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   783
\underset{s_i \text{ which just matched} \;r_i}{\backslash i}$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   784
\end{center}
606
Chengsong
parents: 605
diff changeset
   785
%The backslash and number $i$ are the
Chengsong
parents: 605
diff changeset
   786
%so-called "back-references".
Chengsong
parents: 605
diff changeset
   787
%Let $e$ be an expression made of regular expressions 
Chengsong
parents: 605
diff changeset
   788
%and back-references. $e$ contains the expression $e_i$
Chengsong
parents: 605
diff changeset
   789
%as its $i$-th capturing group.
Chengsong
parents: 605
diff changeset
   790
%The semantics of back-reference can be recursively
Chengsong
parents: 605
diff changeset
   791
%written as:
Chengsong
parents: 605
diff changeset
   792
%\begin{center}
Chengsong
parents: 605
diff changeset
   793
%	\begin{tabular}{c}
Chengsong
parents: 605
diff changeset
   794
%		$L ( e \cdot \backslash i) = \{s @ s_i \mid s \in L (e)\quad s_i \in L(r_i)$\\
Chengsong
parents: 605
diff changeset
   795
%		$s_i\; \text{match of ($e$, $s$)'s $i$-th capturing group string}\}$
Chengsong
parents: 605
diff changeset
   796
%	\end{tabular}
Chengsong
parents: 605
diff changeset
   797
%\end{center}
Chengsong
parents: 605
diff changeset
   798
A concrete example
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   799
for back-references is
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   800
\begin{center}
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   801
$(.^*)\backslash 1$,
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   802
\end{center}
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   803
which matches
606
Chengsong
parents: 605
diff changeset
   804
strings that can be split into two identical halves,
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   805
for example $\mathit{foofoo}$, $\mathit{ww}$ and so on.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   806
Note that this is different from 
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   807
repeating the  sub-expression verbatim like
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   808
\begin{center}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   809
	$(.^*)(.^*)$,
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   810
\end{center}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   811
which does not impose any restrictions on what strings the second 
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   812
sub-expression $.^*$
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   813
might match.
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   814
Another example of back-references is
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   815
\begin{center}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   816
$(.)(.)\backslash 2\backslash 1$
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   817
\end{center}
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   818
which matches four-character palindromes
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   819
like $abba$, $x??x$ and so on.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   820
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   821
Back-references is a regex construct 
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   822
that programmers find quite useful.
630
d50a309a0645 with Christian
Chengsong
parents: 628
diff changeset
   823
According to Becchi and Crawley~\cite{Becchi08},
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   824
6\% of Snort rules (up until 2008) use them.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   825
The most common use of back-references
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   826
is to express well-formed html files,
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   827
where back-references are convenient for matching
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   828
opening and closing tags like 
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   829
\begin{center}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   830
	$\langle html \rangle \ldots \langle / html \rangle$
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   831
\end{center}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   832
A regex describing such a format
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   833
is
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   834
\begin{center}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   835
	$\langle (.^+) \rangle \ldots \langle / \backslash 1 \rangle$
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   836
\end{center}
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   837
Despite being useful, the expressive power of regexes 
633
f1edd5ee1a12 more, including link
Chengsong
parents: 631
diff changeset
   838
go beyond regular languages 
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   839
once back-references are included.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   840
In fact, they allow the regex construct to express 
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   841
languages that cannot be contained in context-free
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   842
languages either.
608
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   843
For example, the back-reference $(a^*)b\backslash1 b \backslash 1$
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   844
expresses the language $\{a^n b a^n b a^n\mid n \in \mathbb{N}\}$,
633
f1edd5ee1a12 more, including link
Chengsong
parents: 631
diff changeset
   845
which cannot be expressed by context-free grammars \parencite{campeanu2003formal}.
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   846
Such a language is contained in the context-sensitive hierarchy
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   847
of formal languages. 
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   848
Also solving the matching problem involving back-references
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   849
is known to be NP-complete \parencite{alfred2014algorithms}.
608
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   850
Regex libraries supporting back-references such as 
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   851
PCRE \cite{pcre} therefore have to
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   852
revert to a depth-first search algorithm which backtracks.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   853
What is unexpected is that even in the cases 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   854
not involving back-references, there is still
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   855
a (non-negligible) chance they might backtrack super-linearly,
618
233cf2b97d1a chapter 5 finished!!
Chengsong
parents: 612
diff changeset
   856
as shown in the graphs in figure\ref{fig:aStarStarb}.
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   857
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   858
Summing these up, we can categorise existing 
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   859
practical regex libraries into two kinds:
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   860
(i) The ones  with  linear
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   861
time guarantees like Go and Rust. The downside with them is that
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   862
they impose restrictions
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   863
on the regular expressions (not allowing back-references, 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   864
bounded repetitions cannot exceed an ad hoc limit etc.).
633
f1edd5ee1a12 more, including link
Chengsong
parents: 631
diff changeset
   865
And (ii) those 
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   866
that allow large bounded regular expressions and back-references
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   867
at the expense of using backtracking algorithms.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   868
They can potentially ``grind to a halt''
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   869
on some very simple cases, resulting 
633
f1edd5ee1a12 more, including link
Chengsong
parents: 631
diff changeset
   870
ReDoS attacks if exposed to the internet.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   871
633
f1edd5ee1a12 more, including link
Chengsong
parents: 631
diff changeset
   872
The problems with both approaches are the motivation for us 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   873
to look again at the regular expression matching problem. 
4b1149fb5aec incorporated more comments, bib
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parents: 620
diff changeset
   874
Another motivation is that regular expression matching algorithms
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   875
that follow the POSIX standard often contain errors and bugs 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   876
as we shall explain next.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   877
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   878
%We would like to have regex engines that can 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   879
%deal with the regular part (e.g.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   880
%bounded repetitions) of regexes more
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   881
%efficiently.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   882
%Also we want to make sure that they do it correctly.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   883
%It turns out that such aim is not so easy to achieve.
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   884
 %TODO: give examples such as RE2 GOLANG 1000 restriction, rust no repetitions 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   885
% For example, the Rust regex engine claims to be linear, 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   886
% but does not support lookarounds and back-references.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   887
% The GoLang regex library does not support over 1000 repetitions.  
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   888
% Java and Python both support back-references, but shows
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   889
%catastrophic backtracking behaviours on inputs without back-references(
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   890
%when the language is still regular).
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   891
 %TODO: test performance of Rust on (((((a*a*)b*)b){20})*)c  baabaabababaabaaaaaaaaababaaaababababaaaabaaabaaaaaabaabaabababaababaaaaaaaaababaaaababababaaaaaaaaaaaaac
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   892
 %TODO: verify the fact Rust does not allow 1000+ reps
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   893
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   894
605
Chengsong
parents: 604
diff changeset
   895
Chengsong
parents: 604
diff changeset
   896
Chengsong
parents: 604
diff changeset
   897
%The time cost of regex matching algorithms in general
Chengsong
parents: 604
diff changeset
   898
%involve two different phases, and different things can go differently wrong on 
Chengsong
parents: 604
diff changeset
   899
%these phases.
Chengsong
parents: 604
diff changeset
   900
%$\DFA$s usually have problems in the first (construction) phase
Chengsong
parents: 604
diff changeset
   901
%, whereas $\NFA$s usually run into trouble
Chengsong
parents: 604
diff changeset
   902
%on the second phase.
Chengsong
parents: 604
diff changeset
   903
Chengsong
parents: 604
diff changeset
   904
Chengsong
parents: 604
diff changeset
   905
\section{Error-prone POSIX Implementations}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   906
Very often there are multiple ways of matching a string
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   907
with a regular expression.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   908
In such cases the regular expressions matcher needs to
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   909
disambiguate.
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   910
The more widely used strategy is called POSIX,
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   911
which roughly speaking always chooses the longest initial match.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   912
The POSIX strategy is widely adopted in many regular expression matchers.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   913
However, many implementations (including the C libraries
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   914
used by Linux and OS X distributions) contain bugs
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   915
or do not meet the specification they claim to adhere to.
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   916
Kuklewicz maintains a unit test repository which lists some
628
7af4e2420a8c ready to submit~~
Chengsong
parents: 622
diff changeset
   917
problems with existing regular expression engines \cite{KuklewiczHaskell}.
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   918
In some cases, they either fail to generate a
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   919
result when there exists a match,
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   920
or give results that are inconsistent with the POSIX standard.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   921
A concrete example is the regex:
605
Chengsong
parents: 604
diff changeset
   922
\begin{center}
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   923
	$(aba + ab + a)^* \text{and the string} ababa$
605
Chengsong
parents: 604
diff changeset
   924
\end{center}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   925
The correct POSIX match for the above
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   926
is the entire string $ababa$, 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   927
split into two Kleene star iterations, namely $[ab], [aba]$ at positions
605
Chengsong
parents: 604
diff changeset
   928
$[0, 2), [2, 5)$
Chengsong
parents: 604
diff changeset
   929
respectively.
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   930
But trying this out in regex101 \parencite{regex101} \footnote{
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   931
	regex101 is an online regular expression matcher which
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   932
	provides API for trying out regular expression
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   933
	engines of multiple popular programming languages like
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   934
Java, Python, Go, etc.}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   935
with different engines yields
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   936
always matches: $[aba]$ at $[0, 3)$
605
Chengsong
parents: 604
diff changeset
   937
and $a$ at $[4, 5)$.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   938
Fowler \cite{fowler2003} and Kuklewicz \cite{KuklewiczHaskell} 
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   939
commented that most regex libraries are not
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   940
correctly implementing the central POSIX
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   941
rule, called the maximum munch rule.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   942
Grathwohl \parencite{grathwohl2014crash} wrote,
605
Chengsong
parents: 604
diff changeset
   943
\begin{quote}
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   944
	``The POSIX strategy is more complicated than the 
605
Chengsong
parents: 604
diff changeset
   945
	greedy because of the dependence on information about 
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   946
	the length of matched strings in the various subexpressions.''
605
Chengsong
parents: 604
diff changeset
   947
\end{quote}
Chengsong
parents: 604
diff changeset
   948
%\noindent
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   949
We think the implementation complexity of POSIX rules also come from
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   950
the specification being not very precise.
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   951
There are many informal summaries of this disambiguation
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   952
strategy, which are often quite long and delicate.
608
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   953
For example Kuklewicz \cite{KuklewiczHaskell} 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   954
described the POSIX rule as (section 1, last paragraph):
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   955
\begin{quote}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   956
	\begin{itemize}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   957
		\item
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   958
regular expressions (REs) take the leftmost starting match, and the longest match starting there
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   959
earlier subpatterns have leftmost-longest priority over later subpatterns\\
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   960
\item
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   961
higher-level subpatterns have leftmost-longest priority over their component subpatterns\\
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   962
\item
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   963
REs have right associative concatenation which can be changed with parenthesis\\
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   964
\item
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   965
parenthesized subexpressions return the match from their last usage\\
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   966
\item
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   967
text of component subexpressions must be contained in the text of the 
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   968
higher-level subexpressions\\
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   969
\item
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   970
if "p" and "q" can never match the same text then "p|q" and "q|p" are equivalent, up to trivial renumbering of captured subexpressions\\
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   971
\item
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   972
if "p" in "p*" is used to capture non-empty text then additional repetitions of "p" will not capture an empty string\\
607
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   973
\end{itemize}
e6fc9b72c0e3 chap1 almost done
Chengsong
parents: 606
diff changeset
   974
\end{quote}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   975
%The text above 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   976
%is trying to capture something very precise,
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   977
%and is crying out for formalising.
608
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   978
Ausaf et al. \cite{AusafDyckhoffUrban2016}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   979
are the first to
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   980
give a quite simple formalised POSIX
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   981
specification in Isabelle/HOL, and also prove 
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   982
that their specification coincides with the 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   983
POSIX specification given by Okui and Suzuki \cite{Okui10}.
608
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   984
They then formally proved the correctness of
37b6fd310a16 added related work chap
Chengsong
parents: 607
diff changeset
   985
a lexing algorithm by Sulzmann and Lu \cite{Sulzmann2014}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   986
with regards to that specification.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   987
They also found that the informal POSIX
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   988
specification by Sulzmann and Lu does not work for the correctness proof.
605
Chengsong
parents: 604
diff changeset
   989
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   990
In the next section we will briefly
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   991
introduce Brzozowski derivatives and Sulzmann
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   992
and Lu's algorithm, which the main point of this thesis builds on.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   993
%We give a taste of what they 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   994
%are like and why they are suitable for regular expression
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   995
%matching and lexing.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   996
\section{Formal Specification of POSIX Matching 
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   997
and Brzozowski Derivatives}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
   998
%Now we start with the central topic of the thesis: Brzozowski derivatives.
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
   999
Brzozowski \cite{Brzozowski1964} first introduced the 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1000
concept of a \emph{derivative} of regular expression in 1964.
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1001
The derivative of a regular expression $r$
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1002
with respect to a character $c$, is written as $r \backslash c$.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1003
This operation tells us what $r$ transforms into
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1004
if we ``chop'' off the first character $c$ 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1005
from all strings in the language of $r$ (defined
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1006
later as $L \; r$).
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1007
%To give a flavour of Brzozowski derivatives, we present
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1008
%two straightforward clauses from it:
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1009
%\begin{center}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1010
%	\begin{tabular}{lcl}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1011
%		$d \backslash c$     & $\dn$ & 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1012
%		$\mathit{if} \;c = d\;\mathit{then}\;\ONE\;\mathit{else}\;\ZERO$\\
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1013
%$(r_1 + r_2)\backslash c$     & $\dn$ & $r_1 \backslash c \,+\, r_2 \backslash c$\\
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1014
%	\end{tabular}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1015
%\end{center}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1016
%\noindent
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1017
%The first clause says that for the regular expression
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1018
%denoting a singleton set consisting of a sinlge-character string $\{ d \}$,
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1019
%we check the derivative character $c$ against $d$,
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1020
%returning a set containing only the empty string $\{ [] \}$
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1021
%if $c$ and $d$ are equal, and the empty set $\varnothing$ otherwise.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1022
%The second clause states that to obtain the regular expression
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1023
%representing all strings' head character $c$ being chopped off
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1024
%from $r_1 + r_2$, one simply needs to recursively take derivative
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1025
%of $r_1$ and $r_2$ and then put them together.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1026
Derivatives have the property
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1027
that $s \in L \; (r\backslash c)$ if and only if 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1028
$c::s \in L \; r$ where $::$ stands for list prepending.
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1029
%This property can be used on regular expressions
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1030
%matching and lexing--to test whether a string $s$ is in $L \; r$,
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1031
%one simply takes derivatives of $r$ successively with
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1032
%respect to the characters (in the correct order) in $s$,
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1033
%and then test whether the empty string is in the last regular expression.
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1034
With this derivatives give a simple solution
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1035
to the problem of matching a string $s$ with a regular
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1036
expression $r$: if the derivative of $r$ w.r.t.\ (in
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1037
succession) all the characters of the string matches the empty string,
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1038
then $r$ matches $s$ (and {\em vice versa}).  
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1039
%This makes formally reasoning about these properties such
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1040
%as correctness and complexity smooth and intuitive.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1041
There had been several mechanised proofs about this property in various theorem
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1042
provers,
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1043
for example one by Owens and Slind \cite{Owens2008} in HOL4,
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1044
another one by Krauss and Nipkow \cite{Nipkow98} in Isabelle/HOL, and
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1045
yet another in Coq by Coquand and Siles \cite{Coquand2012}.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1046
622
4b1149fb5aec incorporated more comments, bib
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diff changeset
  1047
In addition, one can extend derivatives to bounded repetitions
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1048
relatively straightforwardly. For example, the derivative for 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1049
this can be defined as:
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1050
\begin{center}
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1051
	\begin{tabular}{lcl}
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1052
		$r^{\{n\}} \backslash c$     & $\dn$ & $r \backslash c \cdot
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1053
		r^{\{n-1\}}$\\
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1054
	\end{tabular}
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1055
\end{center}
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1056
\noindent
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1057
Experimental results suggest that  unlike DFA-based solutions
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1058
for bounded regular expressions,
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1059
derivatives can cope
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1060
large counters
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1061
quite well.
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1062
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1063
There has also been 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1064
extensions to other constructs.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1065
For example, Owens et al include the derivatives
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1066
for the \emph{NOT} regular expression, which is
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1067
able to concisely express C-style comments of the form
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1068
$/* \ldots */$ (see \cite{Owens2008}).
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1069
Another extension for derivatives is
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1070
regular expressions with look-aheads, done
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1071
by Miyazaki and Minamide
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1072
\cite{Takayuki2019}.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1073
%We therefore use Brzozowski derivatives on regular expressions 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1074
%lexing 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1075
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1076
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1077
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1078
Given the above definitions and properties of
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1079
Brzozowski derivatives, one quickly realises their potential
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1080
in generating a formally verified algorithm for lexing--the clauses and property
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1081
can be easily expressed in a functional programming language 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1082
or converted to theorem prover
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1083
code, with great extensibility.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1084
Perhaps this is the reason why it has sparked quite a bit of interest
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1085
in the functional programming and theorem prover communities in the last
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1086
fifteen or so years (
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1087
\cite{Almeidaetal10}, \cite{Berglund14}, \cite{Berglund18},
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1088
\cite{Chen12} and \cite{Coquand2012}
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1089
to name a few), despite being buried in the ``sands of time'' \cite{Owens2008}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1090
after they were first published by Brzozowski.
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1091
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1092
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1093
However, there are two difficulties with derivative-based matchers:
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1094
First, Brzozowski's original matcher only generates a yes/no answer
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1095
for whether a regular expression matches a string or not.  This is too
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1096
little information in the context of lexing where separate tokens must
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1097
be identified and also classified (for example as keywords
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1098
or identifiers). 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1099
Second, derivative-based matchers need to be more efficient.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1100
Elegant and beautiful
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1101
as many implementations are,
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1102
they can be excruciatingly slow. 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1103
For example, Sulzmann and Lu
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1104
claim a linear running time of their proposed algorithm,
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1105
but that was falsified by our experiments. The running time 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1106
is actually $\Omega(2^n)$ in the worst case.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1107
A similar claim about a theoretical runtime of $O(n^2)$ 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1108
is made for the Verbatim \cite{Verbatim}
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1109
%TODO: give references
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1110
lexer, which calculates POSIX matches and is based on derivatives.
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1111
They formalized the correctness of the lexer, but not their complexity result.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1112
In the performance evaluation section, they analyzed the run time
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1113
of matching $a$ with the string 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1114
\begin{center}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1115
	$\underbrace{a \ldots a}_{\text{n a's}}$.
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1116
\end{center}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1117
\noindent
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1118
They concluded that the algorithm is quadratic in terms of 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1119
the length of the input string.
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1120
When we tried out their extracted OCaml code with our example $(a+aa)^*$,
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1121
the time it took to match a string of 40 $a$'s was approximately 5 minutes.
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1122
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1123
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1124
\subsection{Sulzmann and Lu's Algorithm}
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1125
Sulzmann and Lu~\cite{Sulzmann2014} overcame the first 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1126
problem with the yes/no answer 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1127
by cleverly extending Brzozowski's matching
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1128
algorithm. Their extended version generates additional information on
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1129
\emph{how} a regular expression matches a string following the POSIX
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1130
rules for regular expression matching. They achieve this by adding a
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1131
second ``phase'' to Brzozowski's algorithm involving an injection
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1132
function.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1133
In earlier work, Ausaf et al provided the formal
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1134
specification of what POSIX matching means and proved in Isabelle/HOL
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1135
the correctness
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1136
of this extended algorithm accordingly
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1137
\cite{AusafDyckhoffUrban2016}.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1138
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1139
The version of the algorithm proven correct 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1140
suffers heavily from a 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1141
second difficulty, where the internal derivatives can
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1142
grow to arbitrarily big sizes. 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1143
For example if we start with the
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1144
regular expression $(a+aa)^*$ and take
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1145
successive derivatives according to the character $a$, we end up with
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1146
a sequence of ever-growing derivatives like 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1147
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1148
\def\ll{\stackrel{\_\backslash{} a}{\longrightarrow}}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1149
\begin{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1150
\begin{tabular}{rll}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1151
$(a + aa)^*$ & $\ll$ & $(\ONE + \ONE{}a) \cdot (a + aa)^*$\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1152
& $\ll$ & $(\ZERO + \ZERO{}a + \ONE) \cdot (a + aa)^* \;+\; (\ONE + \ONE{}a) \cdot (a + aa)^*$\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1153
& $\ll$ & $(\ZERO + \ZERO{}a + \ZERO) \cdot (a + aa)^* + (\ONE + \ONE{}a) \cdot (a + aa)^* \;+\; $\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1154
& & $\qquad(\ZERO + \ZERO{}a + \ONE) \cdot (a + aa)^* + (\ONE + \ONE{}a) \cdot (a + aa)^*$\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1155
& $\ll$ & \ldots \hspace{15mm}(regular expressions of sizes 98, 169, 283, 468, 767, \ldots)
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1156
\end{tabular}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1157
\end{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1158
 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1159
\noindent where after around 35 steps we run out of memory on a
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1160
typical computer.  Clearly, the
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1161
notation involving $\ZERO$s and $\ONE$s already suggests
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1162
simplification rules that can be applied to regular regular
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1163
expressions, for example $\ZERO{}\,r \Rightarrow \ZERO$, $\ONE{}\,r
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1164
\Rightarrow r$, $\ZERO{} + r \Rightarrow r$ and $r + r \Rightarrow
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1165
r$. While such simple-minded simplifications have been proved in 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1166
the work by Ausaf et al. to preserve the correctness of Sulzmann and Lu's
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1167
algorithm \cite{AusafDyckhoffUrban2016}, they unfortunately do
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1168
\emph{not} help with limiting the growth of the derivatives shown
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1169
above: the growth is slowed, but the derivatives can still grow rather
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1170
quickly beyond any finite bound.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1171
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1172
Therefore we want to look in this thesis at a second
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1173
algorithm by Sulzmann and Lu where they
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1174
overcame this ``growth problem'' \cite{Sulzmann2014}.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1175
In this version, POSIX values are 
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1176
represented as bit sequences and such sequences are incrementally generated
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1177
when derivatives are calculated. The compact representation
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1178
of bit sequences and regular expressions allows them to define a more
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1179
``aggressive'' simplification method that keeps the size of the
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1180
derivatives finite no matter what the length of the string is.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1181
They make some informal claims about the correctness and linear behaviour
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1182
of this version, but do not provide any supporting proof arguments, not
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1183
even ``pencil-and-paper'' arguments. They write about their bit-coded
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1184
\emph{incremental parsing method} (that is the algorithm to be formalised
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1185
in this dissertation)
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1186
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1187
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1188
  
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1189
  \begin{quote}\it
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1190
  ``Correctness Claim: We further claim that the incremental parsing
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1191
  method [..] in combination with the simplification steps [..]
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1192
  yields POSIX parse trees. We have tested this claim
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1193
  extensively [..] but yet
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1194
  have to work out all proof details.'' \cite[Page 14]{Sulzmann2014}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1195
\end{quote}  
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1196
Ausaf and Urban made some initial progress towards the 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1197
full correctness proof but still had to leave out the optimisation
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1198
Sulzmann and Lu proposed.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1199
Ausaf  wrote \cite{Ausaf},
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1200
  \begin{quote}\it
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1201
``The next step would be to implement a more aggressive simplification procedure on annotated regular expressions and then prove the corresponding algorithm generates the same values as blexer. Alas due to time constraints we are unable to do so here.''
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1202
\end{quote}  
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1203
This thesis implements the aggressive simplifications envisioned
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1204
by Ausaf and Urban,
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1205
together with a formal proof of the correctness of those simplifications.
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1206
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1207
612
Chengsong
parents: 609
diff changeset
  1208
One of the most recent work in the context of lexing
Chengsong
parents: 609
diff changeset
  1209
%with this issue
630
d50a309a0645 with Christian
Chengsong
parents: 628
diff changeset
  1210
is the Verbatim lexer by Egolf, Lasser and Fisher~\cite{Verbatim}.
612
Chengsong
parents: 609
diff changeset
  1211
This is relevant work for us and we will compare it later with 
Chengsong
parents: 609
diff changeset
  1212
our derivative-based matcher we are going to present.
Chengsong
parents: 609
diff changeset
  1213
There is also some newer work called
630
d50a309a0645 with Christian
Chengsong
parents: 628
diff changeset
  1214
Verbatim++~\cite{Verbatimpp}, which does not use derivatives, 
612
Chengsong
parents: 609
diff changeset
  1215
but deterministic finite automaton instead.
Chengsong
parents: 609
diff changeset
  1216
%An example that gives problem to automaton approaches would be
Chengsong
parents: 609
diff changeset
  1217
%the regular expression $(a|b)^*a(a|b)^{\{n\}}$.
Chengsong
parents: 609
diff changeset
  1218
%It requires at least $2^{n+1}$ states to represent
Chengsong
parents: 609
diff changeset
  1219
%as a DFA.
Chengsong
parents: 609
diff changeset
  1220
Chengsong
parents: 609
diff changeset
  1221
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1222
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1223
\section{Contribution}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1224
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1225
In this thesis,
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1226
we propose a solution to catastrophic
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1227
backtracking and error-prone matchers: a formally verified
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1228
regular expression lexing algorithm
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1229
that is both fast
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1230
and correct by extending Ausaf et al.'s work.
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1231
The end result is %a regular expression lexing algorithm that comes with 
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1232
\begin{itemize}
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1233
\item
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1234
an improved version of  Sulzmann and Lu's bit-coded algorithm using 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1235
derivatives with simplifications, 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1236
accompanied by
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1237
a proven correctness theorem according to POSIX specification 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1238
given by Ausaf et al. \cite{AusafDyckhoffUrban2016}, 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1239
\item 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1240
a complexity-related property for that algorithm saying that the 
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1241
internal data structure will
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1242
remain finite,
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1243
\item
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1244
and extension to
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1245
the bounded repetitions construct with the correctness and finiteness property
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1246
maintained.
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1247
\end{itemize}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1248
\noindent
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1249
With a formal finiteness bound in place,
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1250
we can greatly reduce the attack surface of servers in terms of ReDoS attacks.
631
Chengsong
parents: 630
diff changeset
  1251
The Isabelle/HOL code for our formalisation can be 
Chengsong
parents: 630
diff changeset
  1252
found at
Chengsong
parents: 630
diff changeset
  1253
\begin{center}
Chengsong
parents: 630
diff changeset
  1254
\url{https://github.com/hellotommmy/posix}
Chengsong
parents: 630
diff changeset
  1255
\end{center}
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1256
Further improvements to the algorithm with an even stronger version of 
631
Chengsong
parents: 630
diff changeset
  1257
simplification can be made. We conjecture that the resulting size of derivatives
Chengsong
parents: 630
diff changeset
  1258
can be bounded by a cubic bound w.r.t. the size of the regular expression.
Chengsong
parents: 630
diff changeset
  1259
609
61139fdddae0 chap1 totally done
Chengsong
parents: 608
diff changeset
  1260
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1261
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
  1262
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1263
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1264
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1265
\section{Structure of the thesis}
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1266
In chapter \ref{Inj} we will introduce the concepts
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1267
and notations we 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1268
use for describing regular expressions and derivatives,
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1269
and the first version of their lexing algorithm without bitcodes (including 
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1270
its correctness proof).
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1271
We will give their second lexing algorithm with bitcodes in \ref{Bitcoded1}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1272
together with the correctness proof by Ausaf and Urban.
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1273
Then we illustrate in chapter \ref{Bitcoded2}
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1274
how Sulzmann and Lu's
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1275
simplifications fail to simplify. We therefore introduce our version of the
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1276
algorithm with simplification and 
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1277
its correctness proof .  
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1278
In chapter \ref{Finite} we give the second guarantee
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1279
of our bitcoded algorithm, that is a finite bound on the size of any 
631
Chengsong
parents: 630
diff changeset
  1280
regular expression's derivatives. 
Chengsong
parents: 630
diff changeset
  1281
We also show how one can extend the
Chengsong
parents: 630
diff changeset
  1282
algorithm to include bounded repetitions. 
622
4b1149fb5aec incorporated more comments, bib
Chengsong
parents: 620
diff changeset
  1283
In chapter \ref{Cubic} we discuss stronger simplification rules which 
631
Chengsong
parents: 630
diff changeset
  1284
improve the finite bound to a cubic bound.%and the NOT regular expression.
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1285
 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1286
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1287
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1288
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1289
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1290
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1291
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1292
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1293
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1294
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1295
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1296
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1297
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1298
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
  1299