ChengsongTanPhdThesis/Chapters/Introduction.tex
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% Chapter 1
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\chapter{Introduction} % Main chapter title
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\label{Introduction} % For referencing the chapter elsewhere, use \ref{Chapter1} 
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%----------------------------------------------------------------------------------------
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% Define some commands to keep the formatting separated from the content 
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\newcommand{\keyword}[1]{\textbf{#1}}
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\newcommand{\tabhead}[1]{\textbf{#1}}
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\newcommand{\code}[1]{\texttt{#1}}
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\newcommand{\file}[1]{\texttt{\bfseries#1}}
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\newcommand{\option}[1]{\texttt{\itshape#1}}
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%boxes
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\newcommand*{\mybox}[1]{\framebox{\strut #1}}
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%\newcommand{\sflataux}[1]{\textit{sflat}\_\textit{aux} \, #1}
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\newcommand\sflat[1]{\llparenthesis #1 \rrparenthesis }
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\newcommand{\ASEQ}[3]{\textit{ASEQ}_{#1} \, #2 \, #3}
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\newcommand{\bderssimp}[2]{#1 \backslash_{bsimps} #2}
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\newcommand{\rderssimp}[2]{#1 \backslash_{rsimps} #2}
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\def\derssimp{\textit{ders}\_\textit{simp}}
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\def\rders{\textit{rders}}
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\newcommand{\bders}[2]{#1 \backslash #2}
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\newcommand{\bsimp}[1]{\textit{bsimp}(#1)}
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\def\bsimps{\textit{bsimp}}
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\newcommand{\rsimp}[1]{\textit{rsimp}\; #1}
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\newcommand{\sflataux}[1]{\llparenthesis #1 \rrparenthesis'}
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\newcommand{\dn}{\stackrel{\mbox{\scriptsize def}}{=}}%
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\newcommand{\denote}{\stackrel{\mbox{\scriptsize denote}}{=}}%
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\newcommand{\ZERO}{\mbox{\bf 0}}
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\newcommand{\ONE}{\mbox{\bf 1}}
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\newcommand{\AALTS}[2]{\oplus {\scriptstyle #1}\, #2}
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\newcommand{\rdistinct}[2]{\textit{rdistinct} \;\; #1 \;\; #2}
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\def\rdistincts{\textit{rdistinct}}
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\def\rDistinct{\textit{rdistinct}}
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\newcommand\hflat[1]{\llparenthesis  #1 \rrparenthesis_*}
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\newcommand\hflataux[1]{\llparenthesis #1 \rrparenthesis_*'}
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\newcommand\createdByStar[1]{\textit{createdByStar}(#1)}
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\newcommand\myequiv{\mathrel{\stackrel{\makebox[0pt]{\mbox{\normalfont\tiny equiv}}}{=}}}
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\def\SEQ{\textit{SEQ}}
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\def\SEQs{\textit{SEQs}}
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\def\case{\textit{case}}
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\def\sequal{\stackrel{\mbox{\scriptsize rsimp}}{=}}
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\def\rsimpalts{\textit{rsimp}_{ALTS}}
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\def\good{\textit{good}}
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\def\btrue{\textit{true}}
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\def\bfalse{\textit{false}}
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\def\bnullable{\textit{bnullable}}
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\def\bnullables{\textit{bnullables}}
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\def\Some{\textit{Some}}
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\def\None{\textit{None}}
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\def\code{\textit{code}}
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\def\decode{\textit{decode}}
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\def\internalise{\textit{internalise}}
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\def\lexer{\mathit{lexer}}
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\def\mkeps{\textit{mkeps}}
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\newcommand{\rder}[2]{#2 \backslash_r #1}
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\def\rerases{\textit{rerase}}
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\def\nonnested{\textit{nonnested}}
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\def\AZERO{\textit{AZERO}}
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\def\sizeNregex{\textit{sizeNregex}}
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\def\AONE{\textit{AONE}}
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\def\ACHAR{\textit{ACHAR}}
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\def\simpsulz{\textit{simp}_{Sulz}}
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\def\scfrewrites{\stackrel{*}{\rightsquigarrow_{scf}}}
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\def\frewrite{\rightsquigarrow_f}
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\def\frewrites{\stackrel{*}{\rightsquigarrow_f}}
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\def\grewrites{\stackrel{*}{\rightsquigarrow_g}}
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\def\fuse{\textit{fuse}}
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\def\bder{\textit{bder}}
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\def\der{\textit{der}}
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\def\POSIX{\textit{POSIX}}
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\def\ALTS{\textit{ALTS}}
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\def\ASTAR{\textit{ASTAR}}
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\def\DFA{\textit{DFA}}
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\def\NFA{\textit{NFA}}
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\def\bmkeps{\textit{bmkeps}}
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\def\bmkepss{\textit{bmkepss}}
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\def\retrieve{\textit{retrieve}}
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\def\blexer{\textit{blexer}}
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\def\flex{\textit{flex}}
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\def\inj{\textit{inj}}
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\def\Empty{\textit{Empty}}
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\def\Left{\textit{Left}}
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\def\Right{\textit{Right}}
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\def\Stars{\textit{Stars}}
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\def\Char{\textit{Char}}
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\def\Seq{\textit{Seq}}
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\def\Der{\textit{Der}}
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\def\Ders{\textit{Ders}}
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\def\nullable{\mathit{nullable}}
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\def\Z{\mathit{Z}}
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\def\S{\mathit{S}}
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\def\rup{r^\uparrow}
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%\def\bderssimp{\mathit{bders}\_\mathit{simp}}
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\def\distinctWith{\textit{distinctWith}}
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\def\lf{\textit{lf}}
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\def\PD{\textit{PD}}
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\def\suffix{\textit{Suffix}}
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\def\distinctBy{\textit{distinctBy}}
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\def\starupdates{\textit{starUpdates}}
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\def\size{\mathit{size}}
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\def\rexp{\mathbf{rexp}}
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\def\simp{\mathit{simp}}
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\def\simpALTs{\mathit{simp}\_\mathit{ALTs}}
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\def\map{\mathit{map}}
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\def\distinct{\mathit{distinct}}
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\def\blexersimp{\mathit{blexer}\_\mathit{simp}}
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\def\blexerStrong{\textit{blexerStrong}}
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\def\bsimpStrong{\textit{bsimpStrong}}
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\def\bdersStrongs{\textit{bdersStrong}}
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\newcommand{\bdersStrong}[2]{#1 \backslash_{bsimpStrongs} #2}
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\def\map{\textit{map}}
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\def\rrexp{\textit{rrexp}}
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\newcommand\rnullable[1]{\textit{rnullable} \; #1 }
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\newcommand\rsize[1]{\llbracket #1 \rrbracket_r}
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\newcommand\asize[1]{\llbracket #1 \rrbracket}
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\newcommand\rerase[1]{ (#1)_{\downarrow_r}}
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\newcommand\ChristianComment[1]{\textcolor{blue}{#1}\\}
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\def\rflts{\textit{rflts}}
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\def\rrewrite{\textit{rrewrite}}
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\def\bsimpalts{\textit{bsimp}_{ALTS}}
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\def\bsimpaseq{\textit{bsimp}_{ASEQ}}
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\def\rsimlalts{\textit{rsimp}_{ALTs}}
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\def\rsimpseq{\textit{rsimp}_{SEQ}}
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\def\erase{\textit{erase}}
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\def\STAR{\textit{STAR}}
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\def\flts{\textit{flts}}
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\def\zeroable{\textit{zeroable}}
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\def\nub{\textit{nub}}
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\def\filter{\textit{filter}}
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%\def\not{\textit{not}}
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\def\RZERO{\mathbf{0}_r }
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\def\RONE{\mathbf{1}_r}
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\newcommand\RCHAR[1]{\mathbf{#1}_r}
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\newcommand\RSEQ[2]{#1 \cdot #2}
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\newcommand\RALTS[1]{\sum #1}
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\newcommand\RSTAR[1]{#1^*}
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\newcommand\vsuf[2]{\textit{Suffix} \;#1\;#2}
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\lstdefinestyle{myScalastyle}{
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  frame=tb,
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  language=scala,
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  aboveskip=3mm,
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  belowskip=3mm,
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  showstringspaces=false,
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  columns=flexible,
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  basicstyle={\small\ttfamily},
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  numbers=none,
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  numberstyle=\tiny\color{gray},
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  keywordstyle=\color{blue},
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  commentstyle=\color{dkgreen},
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  stringstyle=\color{mauve},
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  frame=single,
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  breaklines=true,
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  breakatwhitespace=true,
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  tabsize=3,
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}
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%----------------------------------------------------------------------------------------
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%This part is about regular expressions, Brzozowski derivatives,
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%and a bit-coded lexing algorithm with proven correctness and time bounds.
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%TODO: look up snort rules to use here--give readers idea of what regexes look like
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Regular expressions are widely used in computer science: 
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be it in text-editors \parencite{atomEditor} with syntax highlighting and auto-completion;
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command-line tools like $\mathit{grep}$ that facilitate easy 
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text-processing; network intrusion
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detection systems that reject suspicious traffic; or compiler
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front ends--the majority of the solutions to these tasks 
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involve lexing with regular 
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expressions.
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Given its usefulness and ubiquity, one would imagine that
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modern regular expression matching implementations
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are mature and fully studied.
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Indeed, in a popular programming language' regex engine, 
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supplying it with regular expressions and strings, one can
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get rich matching information in a very short time.
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Some network intrusion detection systems
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use regex engines that are able to process 
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megabytes or even gigabytes of data per second \parencite{Turo_ov__2020}.
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Unfortunately, this is not the case for $\mathbf{all}$ inputs.
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%TODO: get source for SNORT/BRO's regex matching engine/speed
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\begin{figure}[p]
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\begin{tabular}{@{}c@{\hspace{0mm}}c@{\hspace{0mm}}c@{}}
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={JavaScript},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[red,mark=*, mark options={fill=white}] table {re-js.data};
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\end{axis}
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\end{tikzpicture}
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  &
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    %ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Python},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[blue,mark=*, mark options={fill=white}] table {re-python2.data};
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\end{axis}
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\end{tikzpicture}
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  &
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    %ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Java 8},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[cyan,mark=*, mark options={fill=white}] table {re-java.data};
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\end{axis}
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\end{tikzpicture}\\
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Dart},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[green,mark=*, mark options={fill=white}] table {re-dart.data};
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\end{axis}
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\end{tikzpicture}
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  &
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\begin{tikzpicture}
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\begin{axis}[
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    xlabel={$n$},
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    x label style={at={(1.05,-0.05)}},
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    %ylabel={time in secs},
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    enlargelimits=false,
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    xtick={0,5,...,30},
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    xmax=33,
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    ymax=35,
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    ytick={0,5,...,30},
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    scaled ticks=false,
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    axis lines=left,
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    width=5cm,
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    height=4cm, 
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    legend entries={Swift},  
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    legend pos=north west,
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    legend cell align=left]
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\addplot[purple,mark=*, mark options={fill=white}] table {re-swift.data};
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\end{axis}
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\end{tikzpicture}
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  & \\
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\multicolumn{3}{c}{Graphs}
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\end{tabular}    
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\caption{Graphs showing runtime for matching $(a^*)^*\,b$ with strings 
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           of the form $\protect\underbrace{aa..a}_{n}$ in various existing regular expression libraries.
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   The reason for their superlinear behaviour is that they do a depth-first-search.
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   If the string does not match, the engine starts to explore all possibilities. 
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}\label{fig:aStarStarb}
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\end{figure}\afterpage{\clearpage}
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Take $(a^*)^*\,b$ and ask whether
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strings of the form $aa..a$ match this regular
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expression. Obviously this is not the case---the expected $b$ in the last
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position is missing. One would expect that modern regular expression
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matching engines can find this out very quickly. Alas, if one tries
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this example in JavaScript, Python or Java 8, even with strings of a small
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length, say around 30 $a$'s, one discovers that 
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this decision takes crazy time to finish given the simplicity of the problem.
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This is clearly exponential behaviour, and 
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is triggered by some relatively simple regex patterns, as the graphs
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 in \ref{fig:aStarStarb} show.
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Java 9 and newer
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versions improves this behaviour, but is still slow compared 
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with the approach we are going to use.
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This superlinear blowup in regular expression engines
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had repeatedly caused grief in real life.
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For example, on 20 July 2016 one evil
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regular expression brought the webpage
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\href{http://stackexchange.com}{Stack Exchange} to its
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knees.\footnote{\url{https://stackstatus.net/post/147710624694/outage-postmortem-july-20-2016}(Last accessed in 2019)}
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In this instance, a regular expression intended to just trim white
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spaces from the beginning and the end of a line actually consumed
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massive amounts of CPU resources---causing web servers to grind to a
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halt. In this example, the time needed to process
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the string was $O(n^2)$ with respect to the string length. This
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quadratic overhead was enough for the homepage of Stack Exchange to
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respond so slowly that the load balancer assumed a $\mathit{DoS}$ 
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attack and therefore stopped the servers from responding to any
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requests. This made the whole site become unavailable. 
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A more recent example is a global outage of all Cloudflare servers on 2 July
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2019. A poorly written regular expression exhibited exponential
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behaviour and exhausted CPUs that serve HTTP traffic. Although the outage
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had several causes, at the heart was a regular expression that
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was used to monitor network
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traffic.\footnote{\url{https://blog.cloudflare.com/details-of-the-cloudflare-outage-on-july-2-2019/}(Last accessed in 2022)}
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These problems with regular expressions 
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are not isolated events that happen
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very occasionally, but actually widespread.
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They occur so often that they get a 
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name--Regular-Expression-Denial-Of-Service (ReDoS)
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attack.
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\citeauthor{Davis18} detected more
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than 1000 super-linear (SL) regular expressions
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in Node.js, Python core libraries, and npm and pypi. 
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They therefore concluded that evil regular expressions
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are problems "more than a parlour trick", but one that
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requires
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more research attention.
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Regular expressions and regular expression matchers 
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have of course been studied for many, many years.
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One of the most recent work in the context of lexing
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is the Verbatim lexer by Egolf, Lasser and Fisher\cite{Verbatim}.
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This is relevant work and we will compare later on
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our derivative-based matcher we are going to present.
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There is also some newer work called
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Verbatim++\cite{Verbatimpp}, this does not use derivatives, but automaton instead.
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For that the problem is the bounded repetitions ($r^{n}$,
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$r^{\ldots m}$, $r^{n\ldots}$ and $r^{n\ldots m}$).
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They often occur in practical use, in for example the Snort XML definitions:
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The problems are not limited to slowness on certain 
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cases. 
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Another thing about these libraries is that there
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is no correctness guarantee.
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In some cases, they either fail to generate a lexing result when there exists a match,
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or give results that are inconsistent with the $\POSIX$ standard.
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A concrete example would be the regex
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\begin{center}
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	$(aba + ab + a)* \text{and the string} ababa$
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\end{center}
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The correct $\POSIX$ match for the above would be 
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with the entire string $ababa$, 
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split into two Kleene star iterations, $[ab] [aba]$ at positions
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$[0, 2), [2, 5)$
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respectively.
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But trying this out in regex101\parencite{regex101}
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   418
with different language engines would yield 
8016a2480704 intro and chap2
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the same two fragmented matches: $[aba]$ at $[0, 3)$
8016a2480704 intro and chap2
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and $a$ at $[4, 5)$.
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diff changeset
   421
8016a2480704 intro and chap2
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   422
Kuklewicz\parencite{KuklewiczHaskell} commented that most regex libraries are not
8016a2480704 intro and chap2
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correctly implementing the POSIX (maximum-munch)
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rule of regular expression matching.
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diff changeset
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601
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As Grathwohl\parencite{grathwohl2014crash} wrote,
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\begin{quote}
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	The POSIX strategy is more complicated than the 
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	greedy because of the dependence on information about 
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	the length of matched strings in the various subexpressions.
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\end{quote}
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%\noindent
538
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   433
To summarise the above, regular expressions are important.
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diff changeset
   434
They are popular and programming languages' library functions
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diff changeset
   435
for them are very fast on non-catastrophic cases.
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diff changeset
   436
But there are problems with current practical implementations.
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diff changeset
   437
First thing is that the running time might blow up.
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diff changeset
   438
The second problem is that they might be error-prone on certain
543
b2bea5968b89 thesis_thys
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very simple cases.
538
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diff changeset
   440
In the next part of the chapter, we will look into reasons why 
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diff changeset
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certain regex engines are running horribly slow on the "catastrophic"
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cases and propose a solution that addresses both of these problems
8016a2480704 intro and chap2
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diff changeset
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based on Brzozowski and Sulzmann and Lu's work.
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diff changeset
   444
8016a2480704 intro and chap2
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diff changeset
   445
8016a2480704 intro and chap2
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 \section{Why are current regex engines slow?}
532
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%find literature/find out for yourself that REGEX->DFA on basic regexes
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%does not blow up the size
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Shouldn't regular expression matching be linear?
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How can one explain the super-linear behaviour of the 
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regex matching engines we have?
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The time cost of regex matching algorithms in general
538
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involve two different phases, and different things can go differently wrong on 
8016a2480704 intro and chap2
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diff changeset
   455
these phases.
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diff changeset
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$\DFA$s usually have problems in the first (construction) phase
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diff changeset
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, whereas $\NFA$s usually run into trouble
8016a2480704 intro and chap2
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on the second phase.
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diff changeset
   459
8016a2480704 intro and chap2
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\subsection{Different Phases of a Matching/Lexing Algorithm}
8016a2480704 intro and chap2
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diff changeset
   461
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diff changeset
   462
8016a2480704 intro and chap2
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diff changeset
   463
Most lexing algorithms can be roughly divided into 
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two phases during its run.
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diff changeset
   465
The first phase is the "construction" phase,
8016a2480704 intro and chap2
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diff changeset
   466
in which the algorithm builds some  
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diff changeset
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suitable data structure from the input regex $r$, so that
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diff changeset
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it can be easily operated on later.
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diff changeset
   469
We denote
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diff changeset
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the time cost for such a phase by $P_1(r)$.
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diff changeset
   471
The second phase is the lexing phase, when the input string 
8016a2480704 intro and chap2
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diff changeset
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$s$ is read and the data structure
8016a2480704 intro and chap2
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diff changeset
   473
representing that regex $r$ is being operated on. 
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diff changeset
   474
We represent the time
532
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it takes by $P_2(r, s)$.\\
538
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diff changeset
   476
For $\mathit{DFA}$,
532
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we have $P_2(r, s) = O( |s| )$,
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because we take at most $|s|$ steps, 
cc54ce075db5 restructured
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   479
and each step takes
cc54ce075db5 restructured
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at most one transition--
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a deterministic-finite-automata
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   482
by definition has at most one state active and at most one
cc54ce075db5 restructured
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transition upon receiving an input symbol.
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   484
But unfortunately in the  worst case
538
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$P_1(r) = O(exp^{|r|})$. An example will be given later. 
532
cc54ce075db5 restructured
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For $\mathit{NFA}$s, we have $P_1(r) = O(|r|)$ if we do not unfold 
601
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diff changeset
   487
expressions like $r^n$ into 
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diff changeset
   488
\[
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diff changeset
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	\underbrace{r \cdots r}_{\text{n copies of r}}.
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diff changeset
   490
\]
532
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The $P_2(r, s)$ is bounded by $|r|\cdot|s|$, if we do not backtrack.
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On the other hand, if backtracking is used, the worst-case time bound bloats
601
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diff changeset
   493
to $|r| * 2^{|s|}$.
532
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%on the input
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%And when calculating the time complexity of the matching algorithm,
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%we are assuming that each input reading step requires constant time.
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%which translates to that the number of 
cc54ce075db5 restructured
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%states active and transitions taken each time is bounded by a
cc54ce075db5 restructured
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   499
%constant $C$.
cc54ce075db5 restructured
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%But modern  regex libraries in popular language engines
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% often want to support much richer constructs than just
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   502
% sequences and Kleene stars,
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parents:
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%such as negation, intersection, 
cc54ce075db5 restructured
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   504
%bounded repetitions and back-references.
cc54ce075db5 restructured
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%And de-sugaring these "extended" regular expressions 
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%into basic ones might bloat the size exponentially.
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%TODO: more reference for exponential size blowup on desugaring. 
538
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   508
8016a2480704 intro and chap2
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diff changeset
   509
\subsection{Why $\mathit{DFA}s$ can be slow in the first phase}
8016a2480704 intro and chap2
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diff changeset
   510
8016a2480704 intro and chap2
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diff changeset
   511
532
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The good things about $\mathit{DFA}$s is that once
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generated, they are fast and stable, unlike
cc54ce075db5 restructured
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backtracking algorithms. 
538
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   515
However, they do not scale well with bounded repetitions.
532
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538
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   517
\subsubsection{Problems with Bounded Repetitions}
532
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Bounded repetitions, usually written in the form
cc54ce075db5 restructured
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   519
$r^{\{c\}}$ (where $c$ is a constant natural number),
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parents:
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   520
denotes a regular expression accepting strings
cc54ce075db5 restructured
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   521
that can be divided into $c$ substrings, where each 
cc54ce075db5 restructured
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   522
substring is in $r$. 
cc54ce075db5 restructured
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   523
For the regular expression $(a|b)^*a(a|b)^{\{2\}}$,
cc54ce075db5 restructured
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parents:
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   524
an $\mathit{NFA}$ describing it would look like:
cc54ce075db5 restructured
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\begin{center}
cc54ce075db5 restructured
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   526
\begin{tikzpicture}[shorten >=1pt,node distance=2cm,on grid,auto] 
cc54ce075db5 restructured
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   527
   \node[state,initial] (q_0)   {$q_0$}; 
cc54ce075db5 restructured
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   528
   \node[state, red] (q_1) [right=of q_0] {$q_1$}; 
cc54ce075db5 restructured
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   529
   \node[state, red] (q_2) [right=of q_1] {$q_2$}; 
cc54ce075db5 restructured
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   530
   \node[state, accepting, red](q_3) [right=of q_2] {$q_3$};
cc54ce075db5 restructured
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parents:
diff changeset
   531
    \path[->] 
cc54ce075db5 restructured
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parents:
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   532
    (q_0) edge  node {a} (q_1)
cc54ce075db5 restructured
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parents:
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   533
    	  edge [loop below] node {a,b} ()
cc54ce075db5 restructured
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parents:
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   534
    (q_1) edge  node  {a,b} (q_2)
cc54ce075db5 restructured
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parents:
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   535
    (q_2) edge  node  {a,b} (q_3);
cc54ce075db5 restructured
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   536
\end{tikzpicture}
cc54ce075db5 restructured
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   537
\end{center}
cc54ce075db5 restructured
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   538
The red states are "countdown states" which counts down 
cc54ce075db5 restructured
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parents:
diff changeset
   539
the number of characters needed in addition to the current
cc54ce075db5 restructured
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parents:
diff changeset
   540
string to make a successful match.
cc54ce075db5 restructured
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parents:
diff changeset
   541
For example, state $q_1$ indicates a match that has
cc54ce075db5 restructured
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parents:
diff changeset
   542
gone past the $(a|b)^*$ part of $(a|b)^*a(a|b)^{\{2\}}$,
cc54ce075db5 restructured
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parents:
diff changeset
   543
and just consumed the "delimiter" $a$ in the middle, and 
cc54ce075db5 restructured
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parents:
diff changeset
   544
need to match 2 more iterations of $(a|b)$ to complete.
cc54ce075db5 restructured
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parents:
diff changeset
   545
State $q_2$ on the other hand, can be viewed as a state
cc54ce075db5 restructured
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parents:
diff changeset
   546
after $q_1$ has consumed 1 character, and just waits
cc54ce075db5 restructured
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parents:
diff changeset
   547
for 1 more character to complete.
cc54ce075db5 restructured
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parents:
diff changeset
   548
$q_3$ is the last state, requiring 0 more character and is accepting.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   549
Depending on the suffix of the
cc54ce075db5 restructured
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parents:
diff changeset
   550
input string up to the current read location,
cc54ce075db5 restructured
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parents:
diff changeset
   551
the states $q_1$ and $q_2$, $q_3$
cc54ce075db5 restructured
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parents:
diff changeset
   552
may or may
cc54ce075db5 restructured
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parents:
diff changeset
   553
not be active, independent from each other.
cc54ce075db5 restructured
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parents:
diff changeset
   554
A $\mathit{DFA}$ for such an $\mathit{NFA}$ would
cc54ce075db5 restructured
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parents:
diff changeset
   555
contain at least $2^3$ non-equivalent states that cannot be merged, 
cc54ce075db5 restructured
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parents:
diff changeset
   556
because the subset construction during determinisation will generate
cc54ce075db5 restructured
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parents:
diff changeset
   557
all the elements in the power set $\mathit{Pow}\{q_1, q_2, q_3\}$.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   558
Generalizing this to regular expressions with larger
cc54ce075db5 restructured
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parents:
diff changeset
   559
bounded repetitions number, we have that
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   560
regexes shaped like $r^*ar^{\{n\}}$ when converted to $\mathit{DFA}$s
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   561
would require at least $2^{n+1}$ states, if $r$ contains
cc54ce075db5 restructured
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parents:
diff changeset
   562
more than 1 string.
cc54ce075db5 restructured
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parents:
diff changeset
   563
This is to represent all different 
cc54ce075db5 restructured
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parents:
diff changeset
   564
scenarios which "countdown" states are active.
538
8016a2480704 intro and chap2
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diff changeset
   565
For those regexes, tools that uses $\DFA$s will get
532
cc54ce075db5 restructured
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parents:
diff changeset
   566
out of memory errors.
538
8016a2480704 intro and chap2
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diff changeset
   567
8016a2480704 intro and chap2
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diff changeset
   568
\subsubsection{Tools that uses $\mathit{DFA}$s}
8016a2480704 intro and chap2
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diff changeset
   569
%TODO:more tools that use DFAs?
8016a2480704 intro and chap2
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parents: 537
diff changeset
   570
$\mathit{LEX}$ and $\mathit{JFLEX}$ are tools
8016a2480704 intro and chap2
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diff changeset
   571
in $C$ and $\mathit{JAVA}$ that generates $\mathit{DFA}$-based
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   572
lexers. The user provides a set of regular expressions
8016a2480704 intro and chap2
Chengsong
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diff changeset
   573
and configurations to such lexer generators, and then 
8016a2480704 intro and chap2
Chengsong
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diff changeset
   574
gets an output program encoding a minimized $\mathit{DFA}$
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   575
that can be compiled and run. 
8016a2480704 intro and chap2
Chengsong
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diff changeset
   576
When given the above countdown regular expression,
8016a2480704 intro and chap2
Chengsong
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diff changeset
   577
a small number $n$ would result in a determinised automata
8016a2480704 intro and chap2
Chengsong
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diff changeset
   578
with millions of states.
8016a2480704 intro and chap2
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diff changeset
   579
532
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   580
For this reason, regex libraries that support 
cc54ce075db5 restructured
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diff changeset
   581
bounded repetitions often choose to use the $\mathit{NFA}$ 
cc54ce075db5 restructured
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parents:
diff changeset
   582
approach.
538
8016a2480704 intro and chap2
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diff changeset
   583
8016a2480704 intro and chap2
Chengsong
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diff changeset
   584
8016a2480704 intro and chap2
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diff changeset
   585
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   586
8016a2480704 intro and chap2
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diff changeset
   587
8016a2480704 intro and chap2
Chengsong
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diff changeset
   588
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   589
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   590
8016a2480704 intro and chap2
Chengsong
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diff changeset
   591
\subsection{Why $\mathit{NFA}$s can be slow in the second phase}
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   592
When one constructs an $\NFA$ out of a regular expression
8016a2480704 intro and chap2
Chengsong
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diff changeset
   593
there is often very little to be done in the first phase, one simply 
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   594
construct the $\NFA$ states based on the structure of the input regular expression.
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   595
8016a2480704 intro and chap2
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diff changeset
   596
In the lexing phase, one can simulate the $\mathit{NFA}$ running in two ways:
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   597
one by keeping track of all active states after consuming 
cc54ce075db5 restructured
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parents:
diff changeset
   598
a character, and update that set of states iteratively.
cc54ce075db5 restructured
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parents:
diff changeset
   599
This can be viewed as a breadth-first-search of the $\mathit{NFA}$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   600
for a path terminating
cc54ce075db5 restructured
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parents:
diff changeset
   601
at an accepting state.
cc54ce075db5 restructured
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parents:
diff changeset
   602
Languages like $\mathit{Go}$ and $\mathit{Rust}$ use this
538
8016a2480704 intro and chap2
Chengsong
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diff changeset
   603
type of $\mathit{NFA}$ simulation and guarantees a linear runtime
532
cc54ce075db5 restructured
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diff changeset
   604
in terms of input string length.
cc54ce075db5 restructured
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parents:
diff changeset
   605
%TODO:try out these lexers
cc54ce075db5 restructured
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parents:
diff changeset
   606
The other way to use $\mathit{NFA}$ for matching is choosing  
cc54ce075db5 restructured
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parents:
diff changeset
   607
a single transition each time, keeping all the other options in 
cc54ce075db5 restructured
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parents:
diff changeset
   608
a queue or stack, and backtracking if that choice eventually 
cc54ce075db5 restructured
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parents:
diff changeset
   609
fails. This method, often called a  "depth-first-search", 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   610
is efficient in a lot of cases, but could end up
cc54ce075db5 restructured
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parents:
diff changeset
   611
with exponential run time.\\
cc54ce075db5 restructured
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parents:
diff changeset
   612
%TODO:COMPARE java python lexer speed with Rust and Go
cc54ce075db5 restructured
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parents:
diff changeset
   613
The reason behind backtracking algorithms in languages like
cc54ce075db5 restructured
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parents:
diff changeset
   614
Java and Python is that they support back-references.
538
8016a2480704 intro and chap2
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diff changeset
   615
\subsubsection{Back References}
532
cc54ce075db5 restructured
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parents:
diff changeset
   616
If we have a regular expression like this (the sequence
cc54ce075db5 restructured
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parents:
diff changeset
   617
operator is omitted for brevity):
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   618
\begin{center}
cc54ce075db5 restructured
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parents:
diff changeset
   619
	$r_1(r_2(r_3r_4))$
cc54ce075db5 restructured
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parents:
diff changeset
   620
\end{center}
cc54ce075db5 restructured
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parents:
diff changeset
   621
We could label sub-expressions of interest 
cc54ce075db5 restructured
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parents:
diff changeset
   622
by parenthesizing them and giving 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   623
them a number by the order in which their opening parentheses appear.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   624
One possible way of parenthesizing and labelling is given below:
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   625
\begin{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   626
	$\underset{1}{(}r_1\underset{2}{(}r_2\underset{3}{(}r_3)\underset{4}{(}r_4)))$
cc54ce075db5 restructured
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parents:
diff changeset
   627
\end{center}
cc54ce075db5 restructured
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parents:
diff changeset
   628
$r_1r_2r_3r_4$, $r_1r_2r_3$, $r_3$, $r_4$ are labelled
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   629
by 1 to 4. $1$ would refer to the entire expression 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   630
$(r_1(r_2(r_3)(r_4)))$, $2$ referring to $r_2(r_3)(r_4)$, etc.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   631
These sub-expressions are called "capturing groups".
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   632
We can use the following syntax to denote that we want a string just matched by a 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   633
sub-expression (capturing group) to appear at a certain location again, 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   634
exactly as it was:
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   635
\begin{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   636
$\ldots\underset{\text{i-th lparen}}{(}{r_i})\ldots 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   637
\underset{s_i \text{ which just matched} \;r_i}{\backslash i}$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   638
\end{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   639
The backslash and number $i$ are used to denote such 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   640
so-called "back-references".
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   641
Let $e$ be an expression made of regular expressions 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   642
and back-references. $e$ contains the expression $e_i$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   643
as its $i$-th capturing group.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   644
The semantics of back-reference can be recursively
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   645
written as:
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   646
\begin{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   647
	\begin{tabular}{c}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   648
		$L ( e \cdot \backslash i) = \{s @ s_i \mid s \in L (e)\quad s_i \in L(r_i)$\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   649
		$s_i\; \text{match of ($e$, $s$)'s $i$-th capturing group string}\}$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   650
	\end{tabular}
cc54ce075db5 restructured
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parents:
diff changeset
   651
\end{center}
cc54ce075db5 restructured
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parents:
diff changeset
   652
The concrete example
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   653
$((a|b|c|\ldots|z)^*)\backslash 1$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   654
would match the string like $\mathit{bobo}$, $\mathit{weewee}$ and etc.\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   655
Back-reference is a construct in the "regex" standard
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   656
that programmers found useful, but not exactly 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   657
regular any more.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   658
In fact, that allows the regex construct to express 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   659
languages that cannot be contained in context-free
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   660
languages either.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   661
For example, the back-reference $((a^*)b\backslash1 b \backslash 1$
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   662
expresses the language $\{a^n b a^n b a^n\mid n \in \mathbb{N}\}$,
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   663
which cannot be expressed by context-free grammars\parencite{campeanu2003formal}.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   664
Such a language is contained in the context-sensitive hierarchy
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   665
of formal languages. 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   666
Solving the back-reference expressions matching problem
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   667
is NP-complete\parencite{alfred2014algorithms} and a non-bactracking,
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   668
efficient solution is not known to exist.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   669
%TODO:read a bit more about back reference algorithms
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   670
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   671
It seems that languages like Java and Python made the trade-off
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   672
to support back-references at the expense of having to backtrack,
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   673
even in the case of regexes not involving back-references.\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   674
Summing these up, we can categorise existing 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   675
practical regex libraries into the ones  with  linear
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   676
time guarantees like Go and Rust, which impose restrictions
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   677
on the user input (not allowing back-references, 
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   678
bounded repetitions cannot exceed 1000 etc.), and ones  
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   679
 that allows the programmer much freedom, but grinds to a halt
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   680
 in some non-negligible portion of cases.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   681
 %TODO: give examples such as RE2 GOLANG 1000 restriction, rust no repetitions 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   682
% For example, the Rust regex engine claims to be linear, 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   683
% but does not support lookarounds and back-references.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   684
% The GoLang regex library does not support over 1000 repetitions.  
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   685
% Java and Python both support back-references, but shows
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   686
%catastrophic backtracking behaviours on inputs without back-references(
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   687
%when the language is still regular).
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   688
 %TODO: test performance of Rust on (((((a*a*)b*)b){20})*)c  baabaabababaabaaaaaaaaababaaaababababaaaabaaabaaaaaabaabaabababaababaaaaaaaaababaaaababababaaaaaaaaaaaaac
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   689
 %TODO: verify the fact Rust does not allow 1000+ reps
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   690
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   691
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   692
So we have practical implementations 
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   693
on regular expression matching/lexing which are fast
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   694
but do not come with any guarantees that it will not grind to a halt
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   695
or give wrong answers.
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   696
Our goal is to have a regex lexing algorithm that comes with 
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   697
\begin{itemize}
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   698
\item
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   699
proven correctness 
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   700
\item 
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   701
proven non-catastrophic properties
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   702
\item
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   703
easy extensions to
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   704
constructs like 
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   705
 bounded repetitions, negation,  lookarounds, and even back-references.
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   706
 \end{itemize}
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   707
 
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   708
\section{Our Solution--Formal Specification of POSIX and Brzozowski Derivatives}
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   709
We propose Brzozowski derivatives on regular expressions as
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   710
  a solution to this.
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   711
In the last fifteen or so years, Brzozowski's derivatives of regular
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   712
expressions have sparked quite a bit of interest in the functional
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   713
programming and theorem prover communities.   
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   714
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   715
\subsection{Motivation}
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   716
  
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   717
Derivatives give a simple solution
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   718
to the problem of matching a string $s$ with a regular
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   719
expression $r$: if the derivative of $r$ w.r.t.\ (in
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   720
succession) all the characters of the string matches the empty string,
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   721
then $r$ matches $s$ (and {\em vice versa}).  
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   722
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   723
The beauty of
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   724
Brzozowski's derivatives \parencite{Brzozowski1964} is that they are neatly
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   725
expressible in any functional language, and easily definable and
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   726
reasoned about in theorem provers---the definitions just consist of
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   727
inductive datatypes and simple recursive functions. 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   728
And an algorithms based on it by 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   729
Suzmann and Lu  \parencite{Sulzmann2014} allows easy extension
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   730
to include  extended regular expressions and 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   731
 simplification of internal data structures 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   732
 eliminating the exponential behaviours.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   733
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   734
However, two difficulties with derivative-based matchers exist:
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   735
\subsubsection{Problems with Current Brzozowski Matchers}
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   736
First, Brzozowski's original matcher only generates a yes/no answer
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   737
for whether a regular expression matches a string or not.  This is too
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   738
little information in the context of lexing where separate tokens must
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   739
be identified and also classified (for example as keywords
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   740
or identifiers).  Sulzmann and Lu~\cite{Sulzmann2014} overcome this
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   741
difficulty by cleverly extending Brzozowski's matching
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   742
algorithm. Their extended version generates additional information on
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   743
\emph{how} a regular expression matches a string following the POSIX
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   744
rules for regular expression matching. They achieve this by adding a
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   745
second ``phase'' to Brzozowski's algorithm involving an injection
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   746
function.  In our own earlier work, we provided the formal
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   747
specification of what POSIX matching means and proved in Isabelle/HOL
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   748
the correctness
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   749
of Sulzmann and Lu's extended algorithm accordingly
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   750
\cite{AusafDyckhoffUrban2016}.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   751
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   752
The second difficulty is that Brzozowski's derivatives can 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   753
grow to arbitrarily big sizes. For example if we start with the
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   754
regular expression $(a+aa)^*$ and take
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   755
successive derivatives according to the character $a$, we end up with
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   756
a sequence of ever-growing derivatives like 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   757
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   758
\def\ll{\stackrel{\_\backslash{} a}{\longrightarrow}}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   759
\begin{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   760
\begin{tabular}{rll}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   761
$(a + aa)^*$ & $\ll$ & $(\ONE + \ONE{}a) \cdot (a + aa)^*$\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   762
& $\ll$ & $(\ZERO + \ZERO{}a + \ONE) \cdot (a + aa)^* \;+\; (\ONE + \ONE{}a) \cdot (a + aa)^*$\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   763
& $\ll$ & $(\ZERO + \ZERO{}a + \ZERO) \cdot (a + aa)^* + (\ONE + \ONE{}a) \cdot (a + aa)^* \;+\; $\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   764
& & $\qquad(\ZERO + \ZERO{}a + \ONE) \cdot (a + aa)^* + (\ONE + \ONE{}a) \cdot (a + aa)^*$\\
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   765
& $\ll$ & \ldots \hspace{15mm}(regular expressions of sizes 98, 169, 283, 468, 767, \ldots)
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   766
\end{tabular}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   767
\end{center}
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   768
 
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   769
\noindent where after around 35 steps we run out of memory on a
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   770
typical computer (we shall define shortly the precise details of our
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   771
regular expressions and the derivative operation).  Clearly, the
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   772
notation involving $\ZERO$s and $\ONE$s already suggests
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   773
simplification rules that can be applied to regular regular
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   774
expressions, for example $\ZERO{}\,r \Rightarrow \ZERO$, $\ONE{}\,r
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   775
\Rightarrow r$, $\ZERO{} + r \Rightarrow r$ and $r + r \Rightarrow
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   776
r$. While such simple-minded simplifications have been proved in our
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   777
earlier work to preserve the correctness of Sulzmann and Lu's
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   778
algorithm \cite{AusafDyckhoffUrban2016}, they unfortunately do
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   779
\emph{not} help with limiting the growth of the derivatives shown
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   780
above: the growth is slowed, but the derivatives can still grow rather
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   781
quickly beyond any finite bound.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   782
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   783
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   784
Sulzmann and Lu overcome this ``growth problem'' in a second algorithm
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   785
\cite{Sulzmann2014} where they introduce bit-coded
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   786
regular expressions. In this version, POSIX values are
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   787
represented as bit sequences and such sequences are incrementally generated
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   788
when derivatives are calculated. The compact representation
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   789
of bit sequences and regular expressions allows them to define a more
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   790
``aggressive'' simplification method that keeps the size of the
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   791
derivatives finite no matter what the length of the string is.
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   792
They make some informal claims about the correctness and linear behaviour
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   793
of this version, but do not provide any supporting proof arguments, not
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   794
even ``pencil-and-paper'' arguments. They write about their bit-coded
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   795
\emph{incremental parsing method} (that is the algorithm to be formalised
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   796
in this dissertation)
532
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   797
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   798
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   799
  
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   800
  \begin{quote}\it
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   801
  ``Correctness Claim: We further claim that the incremental parsing
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   802
  method [..] in combination with the simplification steps [..]
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   803
  yields POSIX parse trees. We have tested this claim
cc54ce075db5 restructured
Chengsong
parents:
diff changeset
   804
  extensively [..] but yet
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   805
  have to work out all proof details.'' \cite[Page 14]{Sulzmann2014}
cc54ce075db5 restructured
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parents:
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   806
\end{quote}  
cc54ce075db5 restructured
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parents:
diff changeset
   807
cc54ce075db5 restructured
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parents:
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   808
Ausaf and Urban were able to back this correctness claim with
cc54ce075db5 restructured
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parents:
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   809
a formal proof.
cc54ce075db5 restructured
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parents:
diff changeset
   810
cc54ce075db5 restructured
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parents:
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   811
But as they stated,
cc54ce075db5 restructured
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parents:
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   812
  \begin{quote}\it
cc54ce075db5 restructured
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parents:
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   813
The next step would be to implement a more aggressive simplification procedure on annotated regular expressions and then prove the corresponding algorithm generates the same values as blexer. Alas due to time constraints we are unable to do so here.
cc54ce075db5 restructured
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parents:
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   814
\end{quote}  
cc54ce075db5 restructured
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parents:
diff changeset
   815
cc54ce075db5 restructured
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parents:
diff changeset
   816
This thesis implements the aggressive simplifications envisioned
cc54ce075db5 restructured
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parents:
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   817
by Ausaf and Urban,
cc54ce075db5 restructured
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parents:
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   818
and gives a formal proof of the correctness with those simplifications.
cc54ce075db5 restructured
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parents:
diff changeset
   819
cc54ce075db5 restructured
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parents:
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   820
cc54ce075db5 restructured
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   821
%----------------------------------------------------------------------------------------
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   822
\section{Contribution}
cc54ce075db5 restructured
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diff changeset
   823
cc54ce075db5 restructured
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diff changeset
   824
cc54ce075db5 restructured
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parents:
diff changeset
   825
cc54ce075db5 restructured
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   826
This work addresses the vulnerability of super-linear and
cc54ce075db5 restructured
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parents:
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   827
buggy regex implementations by the combination
cc54ce075db5 restructured
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parents:
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   828
of Brzozowski's derivatives and interactive theorem proving. 
cc54ce075db5 restructured
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parents:
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   829
We give an 
cc54ce075db5 restructured
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   830
improved version of  Sulzmann and Lu's bit-coded algorithm using 
cc54ce075db5 restructured
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parents:
diff changeset
   831
derivatives, which come with a formal guarantee in terms of correctness and 
cc54ce075db5 restructured
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parents:
diff changeset
   832
running time as an Isabelle/HOL proof.
538
8016a2480704 intro and chap2
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diff changeset
   833
Further improvements to the algorithm with an even stronger version of 
8016a2480704 intro and chap2
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parents: 537
diff changeset
   834
simplification is made.
8016a2480704 intro and chap2
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diff changeset
   835
We have not yet come up with one, but believe that it leads to a 
8016a2480704 intro and chap2
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diff changeset
   836
formalised proof with a time bound linear to input and
532
cc54ce075db5 restructured
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diff changeset
   837
cubic to regular expression size using a technique by
538
8016a2480704 intro and chap2
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parents: 537
diff changeset
   838
Antimirov\cite{Antimirov}.
532
cc54ce075db5 restructured
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diff changeset
   839
cc54ce075db5 restructured
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parents:
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   840
 
538
8016a2480704 intro and chap2
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diff changeset
   841
The main contribution of this thesis is 
8016a2480704 intro and chap2
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diff changeset
   842
\begin{itemize}
8016a2480704 intro and chap2
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diff changeset
   843
\item
8016a2480704 intro and chap2
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diff changeset
   844
a proven correct lexing algorithm
8016a2480704 intro and chap2
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diff changeset
   845
\item
8016a2480704 intro and chap2
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diff changeset
   846
with formalized finite bounds on internal data structures' sizes.
8016a2480704 intro and chap2
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parents: 537
diff changeset
   847
\end{itemize}
8016a2480704 intro and chap2
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parents: 537
diff changeset
   848
532
cc54ce075db5 restructured
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diff changeset
   849
To our best knowledge, no lexing libraries using Brzozowski derivatives
cc54ce075db5 restructured
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parents:
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   850
have a provable time guarantee, 
cc54ce075db5 restructured
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parents:
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   851
and claims about running time are usually speculative and backed by thin empirical
cc54ce075db5 restructured
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parents:
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   852
evidence.
cc54ce075db5 restructured
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parents:
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   853
%TODO: give references
cc54ce075db5 restructured
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parents:
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   854
For example, Sulzmann and Lu had proposed an algorithm  in which they
cc54ce075db5 restructured
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parents:
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   855
claim a linear running time.
cc54ce075db5 restructured
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parents:
diff changeset
   856
But that was falsified by our experiments and the running time 
cc54ce075db5 restructured
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parents:
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   857
is actually $\Omega(2^n)$ in the worst case.
cc54ce075db5 restructured
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parents:
diff changeset
   858
A similar claim about a theoretical runtime of $O(n^2)$ is made for the Verbatim
cc54ce075db5 restructured
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parents:
diff changeset
   859
%TODO: give references
cc54ce075db5 restructured
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parents:
diff changeset
   860
lexer, which calculates POSIX matches and is based on derivatives.
cc54ce075db5 restructured
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parents:
diff changeset
   861
They formalized the correctness of the lexer, but not the complexity.
cc54ce075db5 restructured
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parents:
diff changeset
   862
In the performance evaluation section, they simply analyzed the run time
cc54ce075db5 restructured
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parents:
diff changeset
   863
of matching $a$ with the string $\underbrace{a \ldots a}_{\text{n a's}}$
cc54ce075db5 restructured
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parents:
diff changeset
   864
and concluded that the algorithm is quadratic in terms of input length.
cc54ce075db5 restructured
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parents:
diff changeset
   865
When we tried out their extracted OCaml code with our example $(a+aa)^*$,
cc54ce075db5 restructured
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parents:
diff changeset
   866
the time it took to lex only 40 $a$'s was 5 minutes.
cc54ce075db5 restructured
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parents:
diff changeset
   867
cc54ce075db5 restructured
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parents:
diff changeset
   868
cc54ce075db5 restructured
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parents:
diff changeset
   869
cc54ce075db5 restructured
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parents:
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   870
\subsection{Related Work}
cc54ce075db5 restructured
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parents:
diff changeset
   871
We are aware
cc54ce075db5 restructured
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parents:
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   872
of a mechanised correctness proof of Brzozowski's derivative-based matcher in HOL4 by
cc54ce075db5 restructured
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parents:
diff changeset
   873
Owens and Slind~\parencite{Owens2008}. Another one in Isabelle/HOL is part
cc54ce075db5 restructured
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parents:
diff changeset
   874
of the work by Krauss and Nipkow \parencite{Krauss2011}.  And another one
cc54ce075db5 restructured
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parents:
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   875
in Coq is given by Coquand and Siles \parencite{Coquand2012}.
cc54ce075db5 restructured
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parents:
diff changeset
   876
Also Ribeiro and Du Bois give one in Agda \parencite{RibeiroAgda2017}.
cc54ce075db5 restructured
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parents:
diff changeset
   877
 
538
8016a2480704 intro and chap2
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parents: 537
diff changeset
   878
 
8016a2480704 intro and chap2
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parents: 537
diff changeset
   879
 When a regular expression does not behave as intended,
8016a2480704 intro and chap2
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parents: 537
diff changeset
   880
people usually try to rewrite the regex to some equivalent form
8016a2480704 intro and chap2
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parents: 537
diff changeset
   881
or they try to avoid the possibly problematic patterns completely,
8016a2480704 intro and chap2
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parents: 537
diff changeset
   882
for which many false positives exist\parencite{Davis18}.
8016a2480704 intro and chap2
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parents: 537
diff changeset
   883
Animated tools to "debug" regular expressions such as
8016a2480704 intro and chap2
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parents: 537
diff changeset
   884
 \parencite{regexploit2021} \parencite{regex101} are also popular.
8016a2480704 intro and chap2
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parents: 537
diff changeset
   885
We are also aware of static analysis work on regular expressions that
8016a2480704 intro and chap2
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parents: 537
diff changeset
   886
aims to detect potentially expoential regex patterns. Rathnayake and Thielecke 
8016a2480704 intro and chap2
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parents: 537
diff changeset
   887
\parencite{Rathnayake2014StaticAF} proposed an algorithm
8016a2480704 intro and chap2
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parents: 537
diff changeset
   888
that detects regular expressions triggering exponential
8016a2480704 intro and chap2
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parents: 537
diff changeset
   889
behavious on backtracking matchers.
8016a2480704 intro and chap2
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parents: 537
diff changeset
   890
Weideman \parencite{Weideman2017Static} came up with 
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   891
non-linear polynomial worst-time estimates
8016a2480704 intro and chap2
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parents: 537
diff changeset
   892
for regexes, attack string that exploit the worst-time 
8016a2480704 intro and chap2
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parents: 537
diff changeset
   893
scenario, and "attack automata" that generates
8016a2480704 intro and chap2
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parents: 537
diff changeset
   894
attack strings.
8016a2480704 intro and chap2
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parents: 537
diff changeset
   895
8016a2480704 intro and chap2
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parents: 537
diff changeset
   896
532
cc54ce075db5 restructured
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parents:
diff changeset
   897
cc54ce075db5 restructured
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parents:
diff changeset
   898
cc54ce075db5 restructured
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diff changeset
   899
\section{Structure of the thesis}
538
8016a2480704 intro and chap2
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parents: 537
diff changeset
   900
In chapter 2 \ref{Inj} we will introduce the concepts
532
cc54ce075db5 restructured
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   901
and notations we 
cc54ce075db5 restructured
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parents:
diff changeset
   902
use for describing the lexing algorithm by Sulzmann and Lu,
538
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   903
and then give the lexing algorithm.
8016a2480704 intro and chap2
Chengsong
parents: 537
diff changeset
   904
We will give its variant in \ref{Bitcoded1}.
8016a2480704 intro and chap2
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parents: 537
diff changeset
   905
Then we illustrate in \ref{Bitcoded2}
532
cc54ce075db5 restructured
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parents:
diff changeset
   906
how the algorithm without bitcodes falls short for such aggressive 
cc54ce075db5 restructured
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parents:
diff changeset
   907
simplifications and therefore introduce our version of the
538
8016a2480704 intro and chap2
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parents: 537
diff changeset
   908
 bit-coded algorithm and 
532
cc54ce075db5 restructured
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parents:
diff changeset
   909
its correctness proof .  
538
8016a2480704 intro and chap2
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parents: 537
diff changeset
   910
In \ref{Finite} we give the second guarantee
532
cc54ce075db5 restructured
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parents:
diff changeset
   911
of our bitcoded algorithm, that is a finite bound on the size of any 
cc54ce075db5 restructured
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parents:
diff changeset
   912
regex's derivatives.
538
8016a2480704 intro and chap2
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parents: 537
diff changeset
   913
In \ref{Cubic} we discuss stronger simplifications to improve the finite bound
8016a2480704 intro and chap2
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parents: 537
diff changeset
   914
in \ref{Finite} to a polynomial one, and demonstrate how one can extend the
532
cc54ce075db5 restructured
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parents:
diff changeset
   915
algorithm to include constructs such as bounded repetitions and negations.
cc54ce075db5 restructured
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parents:
diff changeset
   916
 
cc54ce075db5 restructured
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parents:
diff changeset
   917
cc54ce075db5 restructured
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parents:
diff changeset
   918
cc54ce075db5 restructured
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parents:
diff changeset
   919
cc54ce075db5 restructured
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parents:
diff changeset
   920
cc54ce075db5 restructured
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parents:
diff changeset
   921
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
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parents:
diff changeset
   922
cc54ce075db5 restructured
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parents:
diff changeset
   923
cc54ce075db5 restructured
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parents:
diff changeset
   924
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
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parents:
diff changeset
   925
cc54ce075db5 restructured
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parents:
diff changeset
   926
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
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parents:
diff changeset
   927
cc54ce075db5 restructured
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parents:
diff changeset
   928
%----------------------------------------------------------------------------------------
cc54ce075db5 restructured
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parents:
diff changeset
   929
cc54ce075db5 restructured
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parents:
diff changeset
   930